View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3721_low_4 (Length: 250)
Name: NF3721_low_4
Description: NF3721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3721_low_4 |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 40891123 - 40891357
Alignment:
| Q |
16 |
gcattgtttttgcaataataaatgccttatcatcacacgtgaaacgttctccatccgacatcccatagaatgttagtgatttcaacgaaggacaactttg |
115 |
Q |
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| T |
40891123 |
gcattttttttgcaataataaatgccttatcatcacacgtgaagtgttctccatccgacatcgcatagaatgttagtgatttcaacgcaggacaactttg |
40891222 |
T |
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| Q |
116 |
gccaataacttcaagagatatattagattctaagcattctgaaatgtaaatctcctctaacaggggaaatttctttgcaacttcacaccacccttcatat |
215 |
Q |
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| T |
40891223 |
cccaataacttcaagagatatattagattctaagcattatgaaatgtaaatctcctctaacaggggaaatttctttacaaattcgcaccacccttcatat |
40891322 |
T |
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| Q |
216 |
gatattctatcgcatgaatcaagtcgtaagcacct |
250 |
Q |
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| T |
40891323 |
gatattctatcgcatgaatcaagttgtaagcacct |
40891357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 38285670 - 38285474
Alignment:
| Q |
14 |
aggcattgtttttgcaataataaatgccttatcatcacacgtgaaacgttctccatccgacatcccatagaatgttagtgatttcaacgaaggacaactt |
113 |
Q |
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| T |
38285670 |
aggcattgtctttgcaataataaatgcct---catcgcacttgctgcggcctccataggacatcccattatatactagtgatttcaacaaaggacaattt |
38285574 |
T |
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| Q |
114 |
tggccaataacttcaagagatatattagattctaagcattctgaaatgtaaatctcctctaacaggggaaatttctttgcaacttcacaccacccttcat |
213 |
Q |
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| T |
38285573 |
tggccaataacttcaagagatatcttagtttggaagccgtgtgaaatgtcaatctcctctaacaggggaaatttctttgcagcttcacaccatccttcat |
38285474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 30621588 - 30621824
Alignment:
| Q |
14 |
aggcattgtttttgcaataataaatgccttatcatcacacgtgaaacgttctccatccgacatcccatagaatgttagtgatttcaacgaaggacaactt |
113 |
Q |
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| T |
30621588 |
aggcattgtttttgcaataataaatgcctcatcatcacacttgaagcggcctctatacgacgccccgttaaatgttagcgatctcaaaagaggacaactt |
30621687 |
T |
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| Q |
114 |
tggccaataacttcaagagatatattagattctaagcattctgaaatgtaaatctcctctaacaggggaaatttctttgcaacttcacaccacccttcat |
213 |
Q |
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| T |
30621688 |
tgaccaataacttcaagagatttcccagattggatgccatatgaaatgttaatctcctctaacaggggaaacttctttgcaactttgcaccaaccttcat |
30621787 |
T |
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| Q |
214 |
atgatattctatcgcatgaatcaagtcgtaagcacct |
250 |
Q |
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| T |
30621788 |
ttgaaactctactgcatgaatcaagtcatatgcacct |
30621824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 51946161 - 51946276
Alignment:
| Q |
108 |
caactttggccaataacttcaagagatatattagattctaagcattctgaaatgtaaatctcctctaacaggggaaatttctttgcaacttcacaccacc |
207 |
Q |
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| T |
51946161 |
caactttggccaacaacttcaagagatttctcagattggaagccatgtgaaatgtcaacctcctctaatagtggaaacttctttgcaacttcacaccatc |
51946260 |
T |
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| Q |
208 |
cttcatatgatattct |
223 |
Q |
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| T |
51946261 |
ctttatctgaaattct |
51946276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 16644210 - 16644256
Alignment:
| Q |
155 |
tgaaatgtaaatctcctctaacaggggaaatttctttgcaacttcac |
201 |
Q |
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| T |
16644210 |
tgaaatgtcaagctcctctaacagtggaaatttgtttgcaacttcac |
16644256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 17618571 - 17618617
Alignment:
| Q |
155 |
tgaaatgtaaatctcctctaacaggggaaatttctttgcaacttcac |
201 |
Q |
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| T |
17618571 |
tgaaatgtcaagctcctctaacagtggaaatttgtttgcaacttcac |
17618617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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