View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3721_low_5 (Length: 249)
Name: NF3721_low_5
Description: NF3721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3721_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 51 - 238
Target Start/End: Complemental strand, 26301786 - 26301599
Alignment:
| Q |
51 |
acaataatgttgatcaattacaatgggatgctccacattttccatcacaatatcctcatatgtgaaattagaagcaaccatggttttgctcaattgtgac |
150 |
Q |
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| T |
26301786 |
acaataatgttgatcaattacaatgtgatactccacattttccatcacaatatcctcatatatgaaattagaagcaaccacggttttgttcaattgtgac |
26301687 |
T |
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| Q |
151 |
tcatatgattttattctaactccattactcgtaccattaaatgtgcaattcttaacaatgatgttagcaagatcttcttcgtattcat |
238 |
Q |
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| T |
26301686 |
tcatatgatttgattctaactccattactcgtaccattaaatgtgcaattcttaacaattatgtcggcaagatcttcttcgtcttcat |
26301599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 11532667 - 11532488
Alignment:
| Q |
51 |
acaataatgttgatcaattacaatgggatgctccacattttccatcacaatatcctcatatgtgaaattagaagcaaccatggttttgctcaattgtgac |
150 |
Q |
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| T |
11532667 |
acaataatcttgatcaatgacaatgggattttgcacattattcatcacaatatcttcatatgtaaaattagaaacaaccaaagttttcttcaattgagac |
11532568 |
T |
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| Q |
151 |
tcatatgattttattctaactccattactcgtaccattaaatgtgcaattcttaacaatgatgttagcaagatcttcttc |
230 |
Q |
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| T |
11532567 |
tcccacgatttgattctaacaccgttacttgtgccattaaaggtacaattcttaacaacaatgtcatcaatatcttcttc |
11532488 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 26883937 - 26883728
Alignment:
| Q |
21 |
acaaacctatttgcggcatagcgaattaggacaataatgttg----atcaattacaatgggatgctccacattttccatcacaatatcctcatatgtgaa |
116 |
Q |
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| T |
26883937 |
acaaacctttttggagcacagggaattaggacaataatcttgatcaatcaatgacaatgggatattgcacattatccaccacaatatctttatatacaaa |
26883838 |
T |
|
| Q |
117 |
attagaagcaaccatggttttgctcaattgtgactcatatgattttattctaactccattactcgtaccattaaatgtgcaattcttaacaatgatgtta |
216 |
Q |
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|||| ||||||||| |||| ||||||| |||| ||||||| |||||||| || |||| |||||| |||| || ||||| ||||||| |||| | |
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| T |
26883837 |
attaaaagcaaccaaagtttacttcaattgagactttcatgatttgattctaacatcaatacttgtaccactaaaggtacaatttgtaacaattatgtca |
26883738 |
T |
|
| Q |
217 |
gcaagatctt |
226 |
Q |
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| T |
26883737 |
tcaagatctt |
26883728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 26884637 - 26884428
Alignment:
| Q |
21 |
acaaacctatttgcggcatagcgaattaggacaataatgttg----atcaattacaatgggatgctccacattttccatcacaatatcctcatatgtgaa |
116 |
Q |
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|||||||| |||| ||| || |||||||||||||||| ||| |||||| |||||||||| | |||||| |||| ||||||||| | |||| || |
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| T |
26884637 |
acaaacctttttggagcacagagaattaggacaataatcttgatcaatcaatgacaatgggatattgcacattatccaccacaatatctttatatacaaa |
26884538 |
T |
|
| Q |
117 |
attagaagcaaccatggttttgctcaattgtgactcatatgattttattctaactccattactcgtaccattaaatgtgcaattcttaacaatgatgtta |
216 |
Q |
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|||| ||||||||| |||| ||||||| |||| ||||||| |||||||| || |||| |||||| |||| || ||||| ||||||| |||| | |
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| T |
26884537 |
attaaaagcaaccaaagtttacttcaattgagacttccatgatttgattctaacatcaatacttgtaccactaaaggtacaatttgtaacaattatgtca |
26884438 |
T |
|
| Q |
217 |
gcaagatctt |
226 |
Q |
| |
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||||||||| |
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| T |
26884437 |
tcaagatctt |
26884428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 26886298 - 26886135
Alignment:
| Q |
63 |
atcaattacaatgggatgctccacattttccatcacaatatcctcatatgtgaaattagaagcaaccatggttttgctcaattgtgactcatatgatttt |
162 |
Q |
| |
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|||||| |||||||| | | |||||| |||||||||||||| | |||| | |||||| ||||||||| |||| |||| || ||||| ||||||| |
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| T |
26886298 |
atcaatgacaatggggtattgcacattatccatcacaatatctttatatataaaattaaaagcaaccaaagtttacttcaactgagactcccatgatttg |
26886199 |
T |
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| Q |
163 |
attctaactccattactcgtaccattaaatgtgcaattcttaacaatgatgttagcaagatctt |
226 |
Q |
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|||||||| || |||| |||||| ||| |||||||| ||||||| |||| | ||||||||| |
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| T |
26886198 |
attctaacatcaatacttgtaccactaagggtgcaatttttaacaactatgtcatcaagatctt |
26886135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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