View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3722_high_2 (Length: 467)

Name: NF3722_high_2
Description: NF3722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3722_high_2
NF3722_high_2
[»] chr4 (4 HSPs)
chr4 (13-449)||(55841815-55842251)
chr4 (13-449)||(55777635-55778071)
chr4 (103-179)||(31229046-31229122)
chr4 (104-228)||(50859398-50859522)
[»] chr6 (1 HSPs)
chr6 (74-349)||(10871807-10872082)
[»] chr3 (1 HSPs)
chr3 (70-189)||(25909509-25909628)
[»] chr1 (5 HSPs)
chr1 (73-179)||(15582299-15582405)
chr1 (70-228)||(41404819-41404977)
chr1 (75-152)||(50677441-50677518)
chr1 (104-228)||(48046985-48047109)
chr1 (196-228)||(7521708-7521740)
[»] chr7 (2 HSPs)
chr7 (111-179)||(12634105-12634173)
chr7 (101-155)||(33451202-33451256)
[»] scaffold0039 (1 HSPs)
scaffold0039 (104-230)||(57620-57746)
[»] chr2 (4 HSPs)
chr2 (70-228)||(28219681-28219839)
chr2 (104-228)||(17998993-17999117)
chr2 (198-234)||(8856010-8856046)
chr2 (168-228)||(28198598-28198658)
[»] chr5 (1 HSPs)
chr5 (168-228)||(30085585-30085645)
[»] chr8 (3 HSPs)
chr8 (115-179)||(20307770-20307834)
chr8 (115-179)||(21094403-21094467)
chr8 (115-179)||(44605940-44606004)


Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 13 - 449
Target Start/End: Complemental strand, 55842251 - 55841815
Alignment:
13 aatataaattcaactatccagggacagaattaagactctgtttagataatctaaaacgagcggaatggaatggagtggcatgaaatgaaacggaatagat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
55842251 aatataaattcaactatccagggacagaattaagactctgtttagataatctaaaacgagcggaatggaatggagtggcatggaatgaaacggaatagat 55842152  T
113 attccattccactgtttggacattttatgatggaatggaataaacctcccattcgattgtttggaaaatgaatggaaggaagagagttataacttattta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55842151 attccattccactgtttggacattttatgatggaatggaataaacttcccattcgattgtttggaaaatgaatggaaggaagagagttataacttattta 55842052  T
213 tttcatttttacccttatttaatttaaaagtcatgtacaaagtatatttacttatcaaaacaatgttaactaaaataaaaaatatcagaagaataacaag 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55842051 tttcatttttacccttatttaatttaaaagtcatgtacaaagtatatttacttatcaaaacaatgttaactaaaataaaaaatatcagaagaataacaag 55841952  T
313 aaagcaaatgcaaatgatttgataaaacaagcatacactactagatacaggaaagcaactcaatatttcattttttccattgtgtgaggccggccattaa 412  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
55841951 aaagcaaatgcaaatgatttgataaaataagaatacactactagatacaggaaagcaactcaatatttcattttttccattgtctgaggccggccattaa 55841852  T
413 ggatcnnnnnnnaattgttttaatgattccaaagctc 449  Q
    |||||       |||||||||||||||||||||||||    
55841851 ggatctttttttaattgttttaatgattccaaagctc 55841815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 13 - 449
Target Start/End: Complemental strand, 55778071 - 55777635
Alignment:
13 aatataaattcaactatccagggacagaattaagactctgtttagataatctaaaacgagcggaatggaatggagtggcatgaaatgaaacggaatagat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
55778071 aatataaattcaactatccagggacagaattaagactctgtttagataatctaaaacgagcggaatggaatggagtggcatggaatgaaacggaatagat 55777972  T
113 attccattccactgtttggacattttatgatggaatggaataaacctcccattcgattgtttggaaaatgaatggaaggaagagagttataacttattta 212  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55777971 attccattccactgtttggactttttatgatggaatggaataaacttcccattcgattgtttggaaaatgaatggaaggaagagagttataacttattta 55777872  T
213 tttcatttttacccttatttaatttaaaagtcatgtacaaagtatatttacttatcaaaacaatgttaactaaaataaaaaatatcagaagaataacaag 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55777871 tttcatttttacccttatttaatttaaaagtcatgtacaaagtatatttacttatcaaaacaatgttaactaaaataaaaaatatcagaagaataacaag 55777772  T
313 aaagcaaatgcaaatgatttgataaaacaagcatacactactagatacaggaaagcaactcaatatttcattttttccattgtgtgaggccggccattaa 412  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
55777771 aaagcaaatgcaaatgatttgataaaataagaatacactactagatacaggaaagcaactcaatatttcattttttccattgtctgaggccggccattaa 55777672  T
413 ggatcnnnnnnnaattgttttaatgattccaaagctc 449  Q
    |||||       |||||||||||||||||||||||||    
55777671 ggatctttttttaattgttttaatgattccaaagctc 55777635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 31229122 - 31229046
Alignment:
103 cggaatagatattccattccactgtttggacattttatgatggaatggaataaacctcccattcgattgtttggaaa 179  Q
    ||||||| ||||| |||||||||||||||| |||||||||  ||||| || |||  || || || ||||||||||||    
31229122 cggaataaatatttcattccactgtttggatattttatgagagaatgaaacaaatttcacaatccattgtttggaaa 31229046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 50859522 - 50859398
Alignment:
104 ggaatagatattccattccactgtttggacattttatgatggaatggaataaacctcccattcgattgtttggaaaatgaatggaaggaagagagttata 203  Q
    |||||| | ||| ||||||| |||||||| ||||| ||| |||||| ||  ||  ||||| || ||| |||||||| || | |||| | |  ||||||||    
50859522 ggaataaagattacattccattgtttggatattttttgacggaatgaaactaatttcccactccattatttggaaagtggacggaatggaatgagttata 50859423  T
204 acttatttatttcatttttaccctt 228  Q
    |||| |||||| |||||||||||||    
50859422 acttttttattccatttttaccctt 50859398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 74 - 349
Target Start/End: Complemental strand, 10872082 - 10871807
Alignment:
74 ggaatggaatggagtggcatgaaatgaaacggaatagatattccattccactgtttggacattttatgatggaatggaataaacctcccattcgattgtt 173  Q
    |||||||||||||| || ||| |||| | ||| || |||||||||||||| | |||||| |||||||||||||||||||||||| | | |||| ||||||    
10872082 ggaatggaatggagcgggatggaatggagcgggatcgatattccattccattatttggatattttatgatggaatggaataaactttcaattctattgtt 10871983  T
174 tggaaaatgaatggaaggaagagagttataacttatttatttcatttttacccttatttaa-tttaaaagtcatgtacaaagtatatttacttatcaaaa 272  Q
    |||||| || |||||| | | ||  |||||||||||||||| ||||||||||||||||||| |  ||||| |||| |||||| | ||| |  ||||||||    
10871982 tggaaagtggatggaatggaaagcattataacttatttattccatttttacccttatttaactaaaaaagacatgaacaaagcaaattgaaatatcaaaa 10871883  T
273 caatgttaactaaaataaaaaatatcagaagaataacaagaaagcaaatgcaaatgatttgataaaacaagcataca 349  Q
    |||||||||  ||||  ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||    
10871882 caatgttaaacaaaa-caaaaatatcagaagaataacaaggaagcaaatgtaaatgatttgataaaacaaggataca 10871807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 25909628 - 25909509
Alignment:
70 gagcggaatggaatggagtggcatgaaatgaaacggaatagatattccattccactgtttggacattttatgatggaatggaataaacctcccattcgat 169  Q
    ||||||| |||||| ||| || ||| |||  || |||||||||||| |||||||||||||||| |||||||||||||| ||||||||| || ||||  ||    
25909628 gagcggagtggaatagagagggatggaatcgaatggaatagatatttcattccactgtttggatattttatgatggaacggaataaacttctcatttcat 25909529  T
170 tgtttggaaaatgaatggaa 189  Q
    | ||||||||||| ||||||    
25909528 tatttggaaaatggatggaa 25909509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 15582405 - 15582299
Alignment:
73 cggaatggaatggagtggcatgaaatgaaacggaatagatattccattccactgtttggacattttatgatggaatggaataaacctcccattcgattgt 172  Q
    |||||||||| |||  || ||| |||| ||||||||| | ||||||||||| |||||||| | |||||||||||||||||  ||  | |||||| |||||    
15582405 cggaatggaacggaagggaatggaatggaacggaataaaaattccattccattgtttggatactttatgatggaatggaactaattttccattccattgt 15582306  T
173 ttggaaa 179  Q
    |||||||    
15582305 ttggaaa 15582299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 70 - 228
Target Start/End: Complemental strand, 41404977 - 41404819
Alignment:
70 gagcggaatggaatggagtggcatgaaatgaaacggaatagatattccattccactgtttggacattttatgatggaatggaataaacctcccattcgat 169  Q
    ||||||||||||| |||  || ||| |||| ||||||||| | |||||||||||||||||||| | |||| || |||||  | | ||  |||||||| ||    
41404977 gagcggaatggaacggaacgggatggaatggaacggaataaagattccattccactgtttggatactttacgacggaatctagttaatttcccattccat 41404878  T
170 tgtttggaaaatgaatggaaggaagagagttataacttatttatttcatttttaccctt 228  Q
    |||||||||||| || |||| | |  ||||||||| |  |||||| || ||||||||||    
41404877 tgtttggaaaatcaacggaacggaatgagttataaatattttattccaattttaccctt 41404819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 50677441 - 50677518
Alignment:
75 gaatggaatggagtggcatgaaatgaaacggaatagatattccattccactgtttggacattttatgatggaatggaa 152  Q
    |||||||||||||  | ||||||||||| |||||||| ||| |||||||  ||||||| |||||| ||||||| ||||    
50677441 gaatggaatggagcagaatgaaatgaaatggaatagagattacattccatcgtttggatattttacgatggaacggaa 50677518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 48047109 - 48046985
Alignment:
104 ggaatagatattccattccactgtttggacattttatgatggaatggaataaacctcccattcgattgtttggaaaatgaatggaa-ggaagagagttat 202  Q
    |||||| | ||| ||||||| |||||||| |||||| ||  ||||||||  ||  ||||| || |||||||||||| ||||||||| |||| |  |||||    
48047109 ggaataaaaatttcattccattgtttggaaattttaagacagaatggaactaatttcccactccattgtttggaaagtgaatggaacggaaca-tgttat 48047011  T
203 aacttatttatttcatttttaccctt 228  Q
    ||||| |||||| || ||||||||||    
48047010 aacttttttattccaattttaccctt 48046985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 7521740 - 7521708
Alignment:
196 gagttataacttatttatttcatttttaccctt 228  Q
    |||||||||||||||||||||| ||||||||||    
7521740 gagttataacttatttatttcaattttaccctt 7521708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 12634173 - 12634105
Alignment:
111 atattccattccactgtttggacattttatgatggaatggaataaacctcccattcgattgtttggaaa 179  Q
    |||||||| ||||||||||||| ||||||||| | |||||||||||  || ||||| ||||||||||||    
12634173 atattccactccactgtttggatattttatgacgaaatggaataaatttcacattccattgtttggaaa 12634105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 33451256 - 33451202
Alignment:
101 aacggaatagatattccattccactgtttggacattttatgatggaatggaataa 155  Q
    |||||||  ||||||||||||||| ||||||| ||||||||||| ||||||||||    
33451256 aacggaaccgatattccattccaccgtttggaaattttatgatgtaatggaataa 33451202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 57746 - 57620
Alignment:
104 ggaatagatattccattccactgtttggacattttatgatggaatggaataaacctcccattcgattgtttggaaaatgaatggaaggaagagagttata 203  Q
    |||||| | ||| ||||||| |||||||| | |||||||||||| ||||  |   | |||||| |||||||||||| | || |||| | |  ||||||||    
57746 ggaataaagatttcattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagttaacggaacggaacgagttata 57647  T
204 acttatttatttcatttttacccttat 230  Q
    |||| ||||||||| ||||||||||||    
57646 acttttttatttcaattttacccttat 57620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 228
Target Start/End: Complemental strand, 28219839 - 28219681
Alignment:
70 gagcggaatggaatggagtggcatgaaatgaaacggaatagatattccattccactgtttggacattttatgatggaatggaataaacctcccattcgat 169  Q
    ||||||||||||| ||| ||| ||| |||| |  |||| | | ||| ||||||| |||||||| ||| || |  |||||||||  ||  ||||| || ||    
28219839 gagcggaatggaacggaatggaatggaatggagtggaacaaagatttcattccattgtttggatattatacggcggaatggaactaatttcccactccat 28219740  T
170 tgtttggaaaatgaatggaaggaagagagttataacttatttatttcatttttaccctt 228  Q
    |||||||||| || | |||| |||   ||||||||||| ||||||||||||||||||||    
28219739 tgtttggaaagtggacggaatgaaattagttataacttttttatttcatttttaccctt 28219681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 17998993 - 17999117
Alignment:
104 ggaatagatattccattccactgtttggacattttatgatggaatggaataaacctcccattcgattgtttggaaaatgaatggaaggaagagagttata 203  Q
    |||||| | ||| ||||| | |||||||| ||||||||| |||||||||  ||  |||||||| |||||||| ||| || | |||| |   || || |||    
17998993 ggaataaaaattacattctattgtttggatattttatgacggaatggaactaatttcccattccattgtttgaaaagtggacggaacgggaagtgtcata 17999092  T
204 acttatttatttcatttttaccctt 228  Q
    |||| ||||||||||||||||||||    
17999093 acttttttatttcatttttaccctt 17999117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 8856046 - 8856010
Alignment:
198 gttataacttatttatttcatttttacccttatttaa 234  Q
    |||||||||| |||||||||||||||||||| |||||    
8856046 gttataacttttttatttcatttttacccttgtttaa 8856010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 28198598 - 28198658
Alignment:
168 attgtttggaaaatgaatggaaggaagagagttataacttatttatttcatttttaccctt 228  Q
    |||||||||||| ||||||||| | |  || ||||||||| |||||| |||||||||||||    
28198598 attgtttggaaagtgaatggaacggaatgatttataacttttttattccatttttaccctt 28198658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 30085645 - 30085585
Alignment:
168 attgtttggaaaatgaatggaaggaagagagttataacttatttatttcatttttaccctt 228  Q
    |||||||||||| ||||||||| | |  || ||||||||| ||||||||||||||||||||    
30085645 attgtttggaaagtgaatggaacggaatgatttataacttttttatttcatttttaccctt 30085585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 20307834 - 20307770
Alignment:
115 tccattccactgtttggacattttatgatggaatggaataaacctcccattcgattgtttggaaa 179  Q
    |||||||||||||||||  |||||||||||||  | |||||| || |||||| | ||||||||||    
20307834 tccattccactgtttgggtattttatgatggagcgaaataaatcttccattccaatgtttggaaa 20307770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 21094467 - 21094403
Alignment:
115 tccattccactgtttggacattttatgatggaatggaataaacctcccattcgattgtttggaaa 179  Q
    |||||||||||||||||  |||||||||||||  | |||||| || |||||| | ||||||||||    
21094467 tccattccactgtttgggtattttatgatggagcgaaataaatcttccattccaatgtttggaaa 21094403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 44606004 - 44605940
Alignment:
115 tccattccactgtttggacattttatgatggaatggaataaacctcccattcgattgtttggaaa 179  Q
    |||||||||||  ||||  ||||||||||||| ||||||||| || |||||| | ||||||||||    
44606004 tccattccactccttgggtattttatgatggagtggaataaatcttccattccaatgtttggaaa 44605940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University