View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3722_high_4 (Length: 358)
Name: NF3722_high_4
Description: NF3722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3722_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 155 - 350
Target Start/End: Original strand, 27136851 - 27137052
Alignment:
| Q |
155 |
aaaagacataaaagtgacaaagttcatgtgcaagatggnnnnnnnnnccctgtgagtcaataaccaaaatacatgacaataagcacaaaggtgcaaaata |
254 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27136851 |
aaaagacataaaagtgacaaagttcacgtgcaagatggaaaaaattaccttgtgagccaataaccaaaatacatgacaataagcacaaaggtgcaaaata |
27136950 |
T |
|
| Q |
255 |
gttcagttttgagtaataactacatgttgcaagttttgatacaatttttgtgctgtcaattgaaacac------atattgtatttgattatttgttcatc |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27136951 |
gttcagttttgagtaataactacatgttgcaagttttgatacaatttttgtgctgtcaattgaaacacattcttatattgtatttgattatttgttcatc |
27137050 |
T |
|
| Q |
349 |
tc |
350 |
Q |
| |
|
|| |
|
|
| T |
27137051 |
tc |
27137052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 27136133 - 27136293
Alignment:
| Q |
19 |
ataatttttgcaacatgtcgcataattataatttttgctttacttcattccggtttgatgaaaaattataaattg---------------------aact |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
27136133 |
ataatttttgcaacatgtcgcataattataatttttgcttcacttcattccgatttgatgaaaaattctaaattgaaaaaaaaaaaaaaaaaaaaaaact |
27136232 |
T |
|
| Q |
98 |
agctaaaatttgaagatcaaactatatttaggttcaatactccaaatatgttctcataaaa |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27136233 |
agctaaaatttgaagatcaaactatatttagattcaatactccaaatatgttctcataaaa |
27136293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 29932238 - 29932131
Alignment:
| Q |
19 |
ataatttttgcaacatgtcgcataattataatttttgctttacttcattccggtttgatgaaaaattataaattgaactagctaaaatttgaagatcaaa |
118 |
Q |
| |
|
||||||||||| ||||||||||| || || |||||||||||||||||| |||||||||||| | ||| ||||||||||||||| | |||| |||| |
|
|
| T |
29932238 |
ataatttttgcgacatgtcgcattttttta-tttttgctttacttcatttgaatttgatgaaaaactctaatttgaactagctaaaaacttaagaacaaa |
29932140 |
T |
|
| Q |
119 |
ctatattta |
127 |
Q |
| |
|
|| |||||| |
|
|
| T |
29932139 |
ctttattta |
29932131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 40018720 - 40018768
Alignment:
| Q |
223 |
atacatgacaataagcacaaaggtgcaaaatagttcagttttgagtaata |
272 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
40018720 |
atacatgacaataagcacagtg-tgcaaaatagttcagttttgagtaata |
40018768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 45642907 - 45643019
Alignment:
| Q |
44 |
ttataatttttgcttta-cttcattccggtttgatgaaaaattataaattgaactagctaaaatttgaagatcaaactatatttaggttcaatactccaa |
142 |
Q |
| |
|
||||||||||| ||| | ||||||| | |||||||||||| | ||| || ||| || ||||| || ||||||||||| ||||||| || || ||||||| |
|
|
| T |
45642907 |
ttataatttttacttaaacttcatttcaatttgatgaaaaactctaatttaaaccagttaaaaatttaagatcaaactttatttagatttaagactccaa |
45643006 |
T |
|
| Q |
143 |
atatgttctcata |
155 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
45643007 |
atatgttttcata |
45643019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 18941515 - 18941451
Alignment:
| Q |
91 |
ttgaactagctaaaatttgaagatcaaactatatttaggttcaatactccaaatatgttctcata |
155 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||| || ||||| ||| |||||||||| ||||| |
|
|
| T |
18941515 |
ttgaactagccaaaaattgaagatcaaactttatctaaattcaaaacttcaaatatgttatcata |
18941451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 273
Target Start/End: Original strand, 4742565 - 4742594
Alignment:
| Q |
244 |
ggtgcaaaatagttcagttttgagtaataa |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4742565 |
ggtgcaaaatagttcagttttgagtaataa |
4742594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University