View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3722_low_1 (Length: 809)

Name: NF3722_low_1
Description: NF3722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3722_low_1
NF3722_low_1
[»] chr5 (13 HSPs)
chr5 (306-794)||(9507626-9508113)
chr5 (303-592)||(9503641-9503930)
chr5 (306-585)||(32090199-32090478)
chr5 (323-592)||(34854063-34854339)
chr5 (333-592)||(3627510-3627770)
chr5 (153-310)||(9503466-9503623)
chr5 (179-314)||(9507471-9507606)
chr5 (17-159)||(9503301-9503444)
chr5 (453-592)||(43095199-43095345)
chr5 (206-298)||(28872330-28872422)
chr5 (474-592)||(2357523-2357641)
chr5 (397-447)||(690121-690171)
chr5 (453-496)||(3031580-3031623)
[»] chr2 (23 HSPs)
chr2 (271-592)||(21794342-21794663)
chr2 (303-592)||(43081486-43081778)
chr2 (303-592)||(45485640-45485929)
chr2 (320-552)||(18163940-18164173)
chr2 (328-592)||(13273316-13273564)
chr2 (421-592)||(45496905-45497078)
chr2 (421-592)||(45504647-45504820)
chr2 (179-307)||(5989243-5989371)
chr2 (179-307)||(45485963-45486091)
chr2 (320-447)||(302387-302513)
chr2 (302-447)||(295733-295878)
chr2 (453-592)||(5989527-5989668)
chr2 (341-447)||(39190647-39190753)
chr2 (453-592)||(1645148-1645289)
chr2 (453-592)||(5983570-5983711)
chr2 (453-592)||(4285175-4285314)
chr2 (323-392)||(29960364-29960433)
chr2 (271-314)||(43081809-43081852)
chr2 (271-307)||(5983380-5983416)
chr2 (271-307)||(13273211-13273247)
chr2 (271-307)||(18163796-18163832)
chr2 (397-447)||(29960425-29960475)
chr2 (536-578)||(31468930-31468972)
[»] chr6 (8 HSPs)
chr6 (271-592)||(7501221-7501560)
chr6 (303-593)||(31888483-31888774)
chr6 (320-447)||(28249226-28249353)
chr6 (453-592)||(367169-367309)
chr6 (454-592)||(7534272-7534412)
chr6 (453-550)||(369060-369158)
chr6 (224-298)||(367474-367548)
chr6 (270-307)||(31888329-31888366)
[»] chr3 (16 HSPs)
chr3 (303-581)||(531393-531671)
chr3 (363-593)||(47743868-47744101)
chr3 (456-592)||(32813716-32813852)
chr3 (179-307)||(32813384-32813512)
chr3 (411-592)||(55418487-55418667)
chr3 (183-298)||(27237112-27237227)
chr3 (303-436)||(4315552-4315685)
chr3 (320-447)||(28920270-28920397)
chr3 (323-417)||(32813598-32813692)
chr3 (453-578)||(27237725-27237855)
chr3 (303-373)||(55418408-55418478)
chr3 (271-314)||(531688-531731)
chr3 (271-312)||(55418362-55418403)
chr3 (271-307)||(4315482-4315518)
chr3 (271-307)||(32813091-32813127)
chr3 (276-307)||(11171985-11172016)
[»] chr7 (7 HSPs)
chr7 (305-592)||(22582189-22582480)
chr7 (453-578)||(35323887-35324014)
chr7 (303-435)||(45937828-45937960)
chr7 (320-432)||(297081-297193)
chr7 (323-440)||(293191-293308)
chr7 (514-592)||(35703408-35703486)
chr7 (271-303)||(22582548-22582580)
[»] chr8 (7 HSPs)
chr8 (320-592)||(11096136-11096406)
chr8 (303-447)||(37186788-37186932)
chr8 (323-447)||(37786581-37786705)
chr8 (453-592)||(14685441-14685577)
chr8 (302-417)||(37791182-37791296)
chr8 (271-304)||(14685248-14685281)
chr8 (271-314)||(11096073-11096116)
[»] chr4 (10 HSPs)
chr4 (323-592)||(53011169-53011441)
chr4 (179-384)||(56563055-56563260)
chr4 (302-585)||(53008256-53008540)
chr4 (180-307)||(53010974-53011101)
chr4 (465-592)||(28571349-28571476)
chr4 (338-447)||(5715318-5715427)
chr4 (328-430)||(16853976-16854078)
chr4 (323-447)||(50935665-50935784)
chr4 (303-445)||(50911862-50912000)
chr4 (271-307)||(53008159-53008195)
[»] scaffold0038 (1 HSPs)
scaffold0038 (320-447)||(49388-49515)
[»] chr1 (3 HSPs)
chr1 (320-447)||(44541359-44541486)
chr1 (453-592)||(10917022-10917162)
chr1 (201-274)||(28451021-28451093)
[»] scaffold0014 (1 HSPs)
scaffold0014 (536-578)||(34602-34644)


Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 306 - 794
Target Start/End: Original strand, 9507626 - 9508113
Alignment:
Q  306 ttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgtta 405  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9507626 ttctgaagtacaacttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttaaaggagtttgtta 9507725  T
Q  406 caatgtccagttatatatatactcactcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctctgttctctct 505  Q
    ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9507726 caacgtccagttatatatatacccactcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctctgttctctct 9507825  T
Q  506 caaaaccatagaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttcttacatttgttacatcaatg 605  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||| ||||||||||||||    
T  9507826 caaaaccataaaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgttggtttcattctaatttcataca-ttgttacatcaatg 9507924  T
Q  606 agactatttcatgtggttacaaaacatcaaaatgaccggttagtaattaaaataattaaaaaatacttcacataccgtccctgactccatgatactaatc 705  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9507925 agactatttcatgtggttacaaaacatcaaaatgaccagttagtaattaaaataattaaaaaatacttcacataccgtccctgactccatgatactaatc 9508024  T
Q  706 tttaactataccgtcgagaggccacacccagcgtgattcattccaggaaagggtcacaaaagatcacactattcatgcacattcaattt 794  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  9508025 tttaactataccgtcgagaggccacacccagcgtgattcattctaggaaagggtcacaaaagatcacattattcatgcacattcaattt 9508113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 303 - 592
Target Start/End: Original strand, 9503641 - 9503930
Alignment:
Q  303 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 402  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  9503641 agcttctgaagtacaatttctgaagtcttcagaagcagagtctagtaataaactttggttagcgtgttaatcaagatagttagtttgttagaggagtttg 9503740  T
Q  403 ttacaatgtccagttatatatatactcactcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctctgttctc 502  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9503741 ttacaacgtccagttatatatatactcactcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctctgttctc 9503840  T
Q  503 tctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  9503841 tctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctggtttcattctaatttcatacatt 9503930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 306 - 585
Target Start/End: Original strand, 32090199 - 32090478
Alignment:
Q  306 ttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgtta 405  Q
    ||||||||||||  |||||||||||| ||||| ||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  32090199 ttctgaagtacagcttctgatgtcttcagaagtagaatctagtaacaaacctcggttagcgtgttaaccaatgtagttagtttgttagaggagtttgtta 32090298  T
Q  406 caatgtccagttatatatatactcactcatgtgttgtaaatagatgac-aattcattcaataaaattacacaagtcttttactcatatctctgttctctc 504  Q
    ||| |||||||| ||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32090299 caacgtccagttgtatatatactcactcatgtgttgtaaata-atgatgaattcattcaataaaattacacaagtcttttactcatatctctgttctctc 32090397  T
Q  505 tcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttc 585  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32090398 tcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctggtttcattctaatttc 32090478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 323 - 592
Target Start/End: Original strand, 34854063 - 34854339
Alignment:
Q  323 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagtta---- 418  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||         
T  34854063 tgatgtcttcagaagcagagtctagtaataaactttggttagcgtgttaaccaaggtagttaatttgttagaggagtttgttacaacgtccagttcagtt 34854162  T
Q  419 -tatatatactcactcatgtgttgtaaatagatgacaatt--cattcaataaaattacacaagtcttttactcatatctctgttctctctcaaaaccata 515  Q
     ||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||    
T  34854163 gtatatatactcactcatgtgttgtaaataaatgacaattttcattcaataaaattacacaaatcttttactcatatctcttttctctctaaaaaccata 34854262  T
Q  516 gaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||| ||||||    
T  34854263 gaaacccagaatctcaattccatcttcttcaattgaacatagttttaagtgctggtttcattctaatttcatacatt 34854339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 333 - 592
Target Start/End: Original strand, 3627510 - 3627770
Alignment:
Q  333 agaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcact 432  Q
    |||||||||||||||||  ||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||||| |||||| | ||||||||||||||    
T  3627510 agaagcagagtctagtagcaaatcttggttagcgtgttaaccaatgtagttagtttattagagaagtttgttacaacgtccagatgtatatatactcact 3627609  T
Q  433 catgtgttgtaaatagatgacaattc-attcaataaaattacacaagtcttttactcatatctctgttctctctc--aaaaccatagaaacccagaatct 529  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||| |||||| ||||||||| | |||||||||  ||||||||||||||||| |||||    
T  3627610 catgtgttgtaaataaatgagaattcaattcaataaaattacacaaatctttt-ctcatatct-ttttctctctcaaaaaaccatagaaacccataatct 3627707  T
Q  530 caattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  3627708 caatttcatcttcttcaattgaacacagttttaagtgctggtttcattctaatttcatacatt 3627770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 153 - 310
Target Start/End: Original strand, 9503466 - 9503623
Alignment:
Q  153 ttctgaaatacaatttctgaagtatagctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaact 252  Q
    ||||||| ||||  |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9503466 ttctgaagtacatcttctgaagtacagctcacaaagccattaaagctaagcagctttgattacttgaagaagaagttaggaatggctgaagcatctaact 9503565  T
Q  253 aaatgaattaaggaggtgtattggtttagtaattcagtttagttagttttagcttctg 310  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9503566 aaatgaattaaggaggtgtattggtttagtaattcaatttagttagttttagcttctg 9503623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 179 - 314
Target Start/End: Original strand, 9507471 - 9507606
Alignment:
Q  179 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9507471 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggttgaagcatctaactaaatgaattaaggaggtgtattggtt 9507570  T
Q  279 tagtaattcagtttagttagttttagcttctgaagt 314  Q
    |||||||||| |||||||||||||||||||||||||    
T  9507571 tagtaattcaatttagttagttttagcttctgaagt 9507606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 9503301 - 9503444
Alignment:
Q  17 tcattacaagtatcacatgtctagtcaataatcacacgaggatactcatcaaattagttaatagttatgtaaatgtccattacagt-ggaggatatgtgg 115  Q
    |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  9503301 tcatcacaagtattacatgtctagtcaataatcatacgaggatactcatcaaattagttaatagttatgtaaatgtccattatagtgggaggatatgtgg 9503400  T
Q  116 gggcatgactcatgagtacagtttagttagttttaacttctgaa 159  Q
    |||||||||||||||||||| ||||||||||||||  |||||||    
T  9503401 gggcatgactcatgagtacaatttagttagttttagtttctgaa 9503444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 453 - 592
Target Start/End: Original strand, 43095199 - 43095345
Alignment:
Q  453 caattcattcaataaaattacacaagtcttttactcatatctctgt-------tctctctcaaaaccatagaaaccc-agaatctcaattccatcttctt 544  Q
    |||||||||||||||| || |||||||||||||||||||||||| |       ||||||||||| | |||||||||| ||||||||||||| ||||||||    
T  43095199 caattcattcaataaattt-cacaagtcttttactcatatctctctctctctctctctctcaaaccaatagaaaccctagaatctcaattcaatcttctt 43095297  T
Q  545 caattgaactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    ||||||||| |||||||||||| | ||||||||| | |||| ||||||    
T  43095298 caattgaacacagttttaagtgttggtttcattcaattttcatacatt 43095345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 28872422 - 28872330
Alignment:
Q  206 ctttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtttagtaattcagtttagttag 298  Q
    ||||||||||||||| | |||||| |||||||||||||||||||||||||| |||||||| |||||| ||| ||||||||||| |||| ||||    
T  28872422 ctttgattacttgaaaatgaagttgggaatggctgaagcatctaactaaataaattaaggtggtgtactggattagtaattcattttatttag 28872330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 474 - 592
Target Start/End: Complemental strand, 2357641 - 2357523
Alignment:
Q  474 acaagtcttttactcatatctctgttctctctcaaaaccatagaaaccc-agaatctcaattccatcttcttcaattgaactcagttttaagtgctagtt 572  Q
    ||||||||||||||||||| ||  || |||||||||| ||||||||||| ||||| | ||| ||||||||||||||||||| |||||||||||| |||||    
T  2357641 acaagtcttttactcatatatccctt-tctctcaaaatcatagaaaccctagaattttaatcccatcttcttcaattgaacacagttttaagtgttagtt 2357543  T
Q  573 tcattctaatttcttacatt 592  Q
    |||||| | |||| ||||||    
T  2357542 tcattcaattttcatacatt 2357523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 397 - 447
Target Start/End: Original strand, 690121 - 690171
Alignment:
Q  397 agtttgttacaatgtccagttatatatatactcactcatgtgttgtaaata 447  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  690121 agtttgttacaatgttcagttgtatatatactcactcatgtgttgtaaata 690171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 453 - 496
Target Start/End: Original strand, 3031580 - 3031623
Alignment:
Q  453 caattcattcaataaaattacacaagtcttttactcatatctct 496  Q
    |||||||||||||||||||||||||||||| ||||||| |||||    
T  3031580 caattcattcaataaaattacacaagtcttctactcatttctct 3031623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 271 - 592
Target Start/End: Complemental strand, 21794663 - 21794342
Alignment:
Q  271 tattggtttagtaattcagtttagttagttttagcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgtt 370  Q
    ||||||||||||| ||||||||||||||||||||||||||| || ||  |||||||||||| |||||||||||||||||| ||||| |||||||||||||    
T  21794663 tattggtttagtagttcagtttagttagttttagcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaacaaaccatggttagcgtgtt 21794564  T
Q  371 aaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcactcatgtgttgtaaatagatgacaattcattcaataaaat 470  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||||| ||||||||||||||||||||||    
T  21794563 aaccaaggtagttagtttgttagaggagtttgttacaacgtccagttgtatatatacttactcatgtgttataaatatatgacaattcattcaataaaat 21794464  T
Q  471 tacacaagtcttttactcatatctctgttctctctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctag 570  Q
    |||||||||||||||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  21794463 tacacaagtcttttactcatatctcttttttctctcaaaatcatagaaacccataatctcaattccatcttcttcaattgaacacagttttaagtgctag 21794364  T
Q  571 tttcattctaatttcttacatt 592  Q
    ||||||||||||||| ||||||    
T  21794363 tttcattctaatttcatacatt 21794342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 303 - 592
Target Start/End: Complemental strand, 43081778 - 43081486
Alignment:
Q  303 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 402  Q
    ||||||||| || ||  |||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||| |||||||||    
T  43081778 agcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaataaacattggttagcatgttaacgaaggtagttagtttgttataggagtttg 43081679  T
Q  403 ttacaatgtccagttatatatatactcactcatgtgttgtaaatagatgacaatt---cattcaataaaattacacaagtcttttactcatatctctgtt 499  Q
    |||||| ||||| || ||||| |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  43081678 ttacaacgtccaattgtatatgtactcactcatgtgttgtaaatagatgacaatttttcattcaataaaattacacaagtcttttactcatatctctgtt 43081579  T
Q  500 ctctctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  43081578 ctctctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctggtttcattttaatttcatacatt 43081486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 303 - 592
Target Start/End: Complemental strand, 45485929 - 45485640
Alignment:
Q  303 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 402  Q
    |||||||||||| ||  |||||||||||| |||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45485929 agcttctgaagtgcagcttctgatgtcttcagaaacagagtctagcaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 45485830  T
Q  403 ttacaatgtccagttatatatatactcactcatgtgttgtaaatagat--gacaattcattcaataaaattacacaagtcttttactcatatctctgttc 500  Q
    |||||| |||||||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||| |||||  ||||||||||||||||||    
T  45485829 ttacaacgtccagttgtatatatactcactcatgtgttgtaaataaattagacaattcattcaataaaattacaaaagtc--ttactcatatctctgttc 45485732  T
Q  501 tctctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    |||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  45485731 tctctcaaaatcatagaaatccagaatctcaactccatcttcttcaattgaactcagttttaagtgctggtttcattctaatttcatacatt 45485640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 320 - 552
Target Start/End: Original strand, 18163940 - 18164173
Alignment:
Q  320 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 419  Q
    |||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  18163940 ttctgatgtctttagaagtagagtctagtaataaccattggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaacgtccagttgt 18164039  T
Q  420 atatatactcactcatgtgttgtaaatagatgac-aattcattcaataaaattacacaagtcttttactcatatctctgttctctctcaaaaccatagaa 518  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18164040 atatatactcactcaagtgttgtaaatagatgacgaattcattcaataaaattacacaagtcttttactcatatctctgttctctctcaaaaccatagaa 18164139  T
Q  519 acccagaatctcaattccatcttcttcaattgaa 552  Q
    ||||||||||||||||||||||||||||||||||    
T  18164140 acccagaatctcaattccatcttcttcaattgaa 18164173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 328 - 592
Target Start/End: Original strand, 13273316 - 13273564
Alignment:
Q  328 tctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatac 427  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||                 |||||||| ||||||||     
T  13273316 tcttcagaagcagagtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttac----------------gtccagttgtatatatat 13273399  T
Q  428 tcactcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctctgttctctctcaaaaccatagaaacccagaat 527  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||    
T  13273400 tcactcatgtgttgtaaatatatgacaatttattcaataaaattacacaagtcttttactcatatctcttttctctctcaaaactatagaaatccagaat 13273499  T
Q  528 ctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    ||||||| |||||||||||||||||| ||||||||| || | |||||||||||||||| ||||||    
T  13273500 ctcaatttcatcttcttcaattgaacacagttttaaatgttggtttcattctaatttcatacatt 13273564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 421 - 592
Target Start/End: Complemental strand, 45497078 - 45496905
Alignment:
Q  421 tatatactcactcatgtgttgtaaatagat--gacaattcattcaataaaattacacaagtcttttactcatatctctgttctctctcaaaaccatagaa 518  Q
    ||||||||||||||||||||||||||| ||  || ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  45497078 tatatactcactcatgtgttgtaaataaattagataattcattcaataaaattacacaagtcttttactcatatttatgttctctctcaaaaccatagaa 45496979  T
Q  519 acccagaatctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |  ||||||||||||||| ||||||    
T  45496978 acccagaatctcaactccatcttcttcaattgaactcagttttaagtgttgttttcattctaatttcatacatt 45496905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 421 - 592
Target Start/End: Complemental strand, 45504820 - 45504647
Alignment:
Q  421 tatatactcactcatgtgttgtaaatagat--gacaattcattcaataaaattacacaagtcttttactcatatctctgttctctctcaaaaccatagaa 518  Q
    ||||||||||||||||||||||||||| ||  || ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  45504820 tatatactcactcatgtgttgtaaataaattagataattcattcaataaaattacacaagtcttttactcatatttatgttctctctcaaaaccatagaa 45504721  T
Q  519 acccagaatctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |  ||||||||||||||| ||||||    
T  45504720 acccagaatctcaactccatcttcttcaattgaactcagttttaagtgttgttttcattctaatttcatacatt 45504647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 179 - 307
Target Start/End: Original strand, 5989243 - 5989371
Alignment:
Q  179 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 278  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5989243 gctcacaaagccattgaagctaagcagctttgattacttgaagaagaagttaggaatggctgaagcatctaagtaaatgaattaaggaggtgtattggtt 5989342  T
Q  279 tagtaattcagtttagttagttttagctt 307  Q
    |||||||||||||||||||||||||||||    
T  5989343 tagtaattcagtttagttagttttagctt 5989371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 179 - 307
Target Start/End: Complemental strand, 45486091 - 45485963
Alignment:
Q  179 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 278  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  45486091 gctcacaaagccattgaagctaagtagctttgattacttgaagaagaagttaggaatggttgaagcatctaactaaatgaattaaggaggtgtatttgtt 45485992  T
Q  279 tagtaattcagtttagttagttttagctt 307  Q
    |||||||||||||||||||||||||||||    
T  45485991 tagtaattcagtttagttagttttagctt 45485963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 320 - 447
Target Start/End: Original strand, 302387 - 302513
Alignment:
Q  320 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 419  Q
    |||||||||||| ||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  302387 ttctgatgtcttcagaagcagagtctagtaaccaaccttggttagcgtgttaaccagggtagttagtttgttagaggagtttgttacaatgtccagttgt 302486  T
Q  420 atatatactcactcatgtgttgtaaata 447  Q
    ||||||||||||| ||||||||||||||    
T  302487 atatatactcact-atgtgttgtaaata 302513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 302 - 447
Target Start/End: Original strand, 295733 - 295878
Alignment:
Q  302 tagcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 401  Q
    |||||||||| || ||  |||||||||||| ||||||||||||||||||  ||||||| |||| |||||||||| | |||||||||||||||||||||||    
T  295733 tagcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaaccaaccttgattagtgtgttaaccaggatagttagtttgttagaggagttt 295832  T
Q  402 gttacaatgtccagttatatatatactcactcatgtgttgtaaata 447  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  295833 gttacaatgtccagttgtatatatactcactcatgtgttgtaaata 295878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 453 - 592
Target Start/End: Original strand, 5989527 - 5989668
Alignment:
Q  453 caattcattcaataaaattacacaagtcttttactcatatctctgtt-ctctctcaaaaccatagaaaccc-agaatctcaattccatcttcttcaattg 550  Q
    |||||||||||||||||||||||||||||||||  ||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5989527 caattcattcaataaaattacacaagtcttttatacatatctctctttctctctcaaaaccatagaaaccctagaatctcaattccatcttcttcaattg 5989626  T
Q  551 aactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    ||| |||||||||||| | ||||| ||| | |||| ||||||    
T  5989627 aacacagttttaagtgttggtttccttcaattttcatacatt 5989668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 341 - 447
Target Start/End: Complemental strand, 39190753 - 39190647
Alignment:
Q  341 agtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcactcatgtgtt 440  Q
    |||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||    
T  39190753 agtctagtaacaaactttggttagcatgttaaccaaggtagttagtttgttagaggagtttgttacaacgtctagttgtatatatactcactcatgtgtt 39190654  T
Q  441 gtaaata 447  Q
    |||||||    
T  39190653 gtaaata 39190647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 453 - 592
Target Start/End: Original strand, 1645148 - 1645289
Alignment:
Q  453 caattcattcaataaaattacacaagtcttttactcatatctctgtt-ctctctcaaaaccatagaaaccc-agaatctcaattccatcttcttcaattg 550  Q
    |||||||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||| | ||||||||||||||||||||| ||||    
T  1645148 caattcattcaataaaattatataagtcttttactcatatctctctttctctctcaaaaccatagaaaccctataatctcaattccatcttcttctattg 1645247  T
Q  551 aactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    ||| |||||||||||| | ||||||||| | |||| ||||||    
T  1645248 aacacagttttaagtgttggtttcattcaattttcatacatt 1645289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 453 - 592
Target Start/End: Original strand, 5983570 - 5983711
Alignment:
Q  453 caattcattcaataaaattacacaagtcttttactcatatctctgtt-ctctctcaaaaccatagaaaccc-agaatctcaattccatcttcttcaattg 550  Q
    ||||||||||||||||||||||||||||||||| |||||||||  || |||||||||||| |||||||||| | ||||||||||||||||||||||||||    
T  5983570 caattcattcaataaaattacacaagtcttttattcatatctcgctttctctctcaaaactatagaaaccctataatctcaattccatcttcttcaattg 5983669  T
Q  551 aactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    ||| || ||||||||| | ||||||||| | |||| ||||||    
T  5983670 aacacaattttaagtgttggtttcattcaattttcatacatt 5983711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 453 - 592
Target Start/End: Original strand, 4285175 - 4285314
Alignment:
Q  453 caattcattcaataaaattacacaagtcttttactcatatctctgttctctctcaaaaccatagaaacccag-aatctcaattccatcttcttcaattga 551  Q
    ||||||||||||||||||||||||||||||||| ||||| |||| || ||| |||||||||||||||||| | |||||||||||||||||||||||||||    
T  4285175 caattcattcaataaaattacacaagtcttttattcatacctctctt-tctatcaaaaccatagaaaccctggaatctcaattccatcttcttcaattga 4285273  T
Q  552 actcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    || ||||||||| || | ||||||||| | |||| ||||||    
T  4285274 acacagttttaaatgttggtttcattcaattttcatacatt 4285314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 323 - 392
Target Start/End: Original strand, 29960364 - 29960433
Alignment:
Q  323 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgtta 392  Q
    ||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29960364 tgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgtta 29960433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 43081852 - 43081809
Alignment:
Q  271 tattggtttagtaattcagtttagttagttttagcttctgaagt 314  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  43081852 tattagtttagtaattcagtttagttagttttagcttctgaagt 43081809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 5983380 - 5983416
Alignment:
Q  271 tattggtttagtaattcagtttagttagttttagctt 307  Q
    |||||||||||||||||||||||||||||||||||||    
T  5983380 tattggtttagtaattcagtttagttagttttagctt 5983416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 13273211 - 13273247
Alignment:
Q  271 tattggtttagtaattcagtttagttagttttagctt 307  Q
    |||||||||||||||||||||||||||||||||||||    
T  13273211 tattggtttagtaattcagtttagttagttttagctt 13273247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 18163796 - 18163832
Alignment:
Q  271 tattggtttagtaattcagtttagttagttttagctt 307  Q
    |||||||||||||||||||||||||||||||||||||    
T  18163796 tattggtttagtaattcagtttagttagttttagctt 18163832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 397 - 447
Target Start/End: Original strand, 29960425 - 29960475
Alignment:
Q  397 agtttgttacaatgtccagttatatatatactcactcatgtgttgtaaata 447  Q
    |||||||||||| ||| |||| |||||||||||||| ||||||||||||||    
T  29960425 agtttgttacaacgtctagttgtatatatactcacttatgtgttgtaaata 29960475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 536 - 578
Target Start/End: Complemental strand, 31468972 - 31468930
Alignment:
Q  536 catcttcttcaattgaactcagttttaagtgctagtttcattc 578  Q
    |||||||||||||||||| |||||||||||| | |||||||||    
T  31468972 catcttcttcaattgaacacagttttaagtgttggtttcattc 31468930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 271 - 592
Target Start/End: Complemental strand, 7501560 - 7501221
Alignment:
Q  271 tattggtttagtaattcagtttagttagttttagcttctgaagtacaatttctgatgtctttaga------------------agcagagtctagtaata 352  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||                  ||||||||||||||| |    
T  7501560 tattgctttagtaattcagtttagttagttttagcttctgaagtacaacttctgatgtcttcagagcttctgatgtcttcacaagcagagtctagtaaca 7501461  T
Q  353 aaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcactcatgtgttgtaaatagatga 452  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| | |||||||||||||||||||||||||||||| |    
T  7501460 aaccttggttagcgtgttaaccaagatagttagtttgttagaggagtttgttacaacgcccagttgtttatatactcactcatgtgttgtaaatagataa 7501361  T
Q  453 caattcattcaataaaattacacaagtcttttactcatatctctgttctctctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaa 552  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7501360 caattcattcaataaaattacacaagtcttttactcatatctcttttctctctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaa 7501261  T
Q  553 ctcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    | |||||||| ||| | |||||||||||||||| ||||||    
T  7501260 cacagttttaggtgttggtttcattctaatttcatacatt 7501221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 303 - 593
Target Start/End: Original strand, 31888483 - 31888774
Alignment:
Q  303 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 402  Q
    ||||||| |||| ||  |||||||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  31888483 agcttctaaagtgcagcttctgatgtcttcagaagcatagtctagtaacaaaccttggttagcgtgttaactaaggtagttagtttgttagagaagtttg 31888582  T
Q  403 ttacaatgtccagttatatatatactcactcatgtgttgtaaatagatgac-aattcattcaataaaattacacaagtcttttactcatatctctgttct 501  Q
    |||||| || || || ||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |||||||||||||||||| ||||    
T  31888583 ttacaacgtgcaattgtatatatactcactcatgtgttgtaaatagatgacgattttattcaataaaattacacaattcttttactcatatctcttttct 31888682  T
Q  502 ctctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttcttacattt 593  Q
     ||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||||||||||| | ||||||||| |||||| |||||||    
T  31888683 ttctcaaaaccatagaaacccaaaatttcagttccatcttcttcaattgaacccagttttaagtgttggtttcattccaatttcatacattt 31888774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 320 - 447
Target Start/End: Original strand, 28249226 - 28249353
Alignment:
Q  320 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 419  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |    
T  28249226 ttctgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagagaagtttgttacaacgtctagttgt 28249325  T
Q  420 atatatactcactcatgtgttgtaaata 447  Q
    ||||||||||||||||||||||||||||    
T  28249326 atatatactcactcatgtgttgtaaata 28249353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 453 - 592
Target Start/End: Complemental strand, 367309 - 367169
Alignment:
Q  453 caattcattcaataaaattacacaagtcttttactcatatctctgtt-ctctctcaaaaccatagaaaccc-agaatctcaattccatcttcttcaattg 550  Q
    |||||||||||||||| ||  ||||||||||||||||||||||| || |||||||||||||||| |||||  ||||||||||||||||||||||||||||    
T  367309 caattcattcaataaatttt-acaagtcttttactcatatctctctttctctctcaaaaccatataaaccttagaatctcaattccatcttcttcaattg 367211  T
Q  551 aactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    ||| ||||||||| || | ||||||||| | |||| ||||||    
T  367210 aacacagttttaaatgttggtttcattcaattttcatacatt 367169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 454 - 592
Target Start/End: Original strand, 7534272 - 7534412
Alignment:
Q  454 aattcattcaataaaattacacaagtcttttactcatatctctgtt--ctctctcaaaaccatagaaaccc-agaatctcaattccatcttcttcaattg 550  Q
    ||||||||||||||| ||  ||||||||||||||||||||||| ||  |||||||||||| |||||||||| ||||||||||||||||||| ||||||||    
T  7534272 aattcattcaataaatttt-acaagtcttttactcatatctctcttttctctctcaaaactatagaaaccctagaatctcaattccatctttttcaattg 7534370  T
Q  551 aactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    ||  ||| |||||||| | ||||||||| | |||| ||||||    
T  7534371 aatacagatttaagtgttggtttcattcaattttcatacatt 7534412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 453 - 550
Target Start/End: Complemental strand, 369158 - 369060
Alignment:
Q  453 caattcattcaataaaattacacaagtcttttactcatatctctgtt-ctctctcaaaaccatagaaaccc-agaatctcaattccatcttcttcaattg 550  Q
    |||||||||||||||| ||  ||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  369158 caattcattcaataaatttt-acaagtcttttactcatatctctctttctctctcaaaatcatagaaaccctagaatctcaattccatcttcttcaattg 369060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 367548 - 367474
Alignment:
Q  224 gaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtttagtaattcagtttagttag 298  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  367548 gaagttgggaatggctgaagcatctaactaaatgaattaaggaggtgtattgattaagtaattcattttagttag 367474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 31888329 - 31888366
Alignment:
Q  270 gtattggtttagtaattcagtttagttagttttagctt 307  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31888329 gtattggtttagtaattcagtttagttagttttagctt 31888366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 303 - 581
Target Start/End: Complemental strand, 531671 - 531393
Alignment:
Q  303 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 402  Q
    |||||||||  | ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  531671 agcttctgatatgcaacttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaacaaaggtagttagttttttagaggagtttg 531572  T
Q  403 ttacaatgtccagttatatatatactcactcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctctgttctc 502  Q
    |||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| |||||    
T  531571 ttacaacgtccagttgtatatatactcactcatgtgttgtaaatatatgacaattcattcaatgaaattacacaagtcttttactcatatatcttttctc 531472  T
Q  503 tctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaa 581  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||| ||||||||||||    
T  531471 tctcaaaaccatagaaacccagaatctcaattccatcttcttcaatcgaacaaagttttaagtgctggtttcattctaa 531393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 363 - 593
Target Start/End: Original strand, 47743868 - 47744101
Alignment:
Q  363 agcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcactcatgtgttgtaaatagatgac-aattca-t 460  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| || ||||| |||||||||||||||||||| ||||| |||||| |    
T  47743868 agcgtgttaaccaaggtagttagtttgttacaggagtttgttacaacgtctagttgtaaatatattcactcatgtgttgtaaata-atgacgaattcaat 47743966  T
Q  461 tcaataaaa--ttacacaagtcttttactcatatctctgttctctctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaactcagt 558  Q
    |||||||||  |||||||| |||||||||| ||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||    
T  47743967 tcaataaaaatttacacaaatcttttactcgtatctcttttctctctcaaaaccatagaaatccataatctcaattccatcttctttaattgaacacagt 47744066  T
Q  559 tttaagtgctagtttcattctaatttcttacattt 593  Q
    |||||||| | |||||||||||||||| |||||||    
T  47744067 tttaagtgttggtttcattctaatttcatacattt 47744101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 456 - 592
Target Start/End: Original strand, 32813716 - 32813852
Alignment:
Q  456 ttcattcaataaaattacacaagtcttttactcatatctctgttctctctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaactc 555  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32813716 ttcattcaataaaattacacaagtctgttactcatatctctgttctctctcaaaaccatagaaacccagaatctcaatttcatcttcttcaattgaactc 32813815  T
Q  556 agttttaagtgctagtttcattctaatttcttacatt 592  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  32813816 agttttaagtgctggtttcattctaatttcatacatt 32813852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 179 - 307
Target Start/End: Original strand, 32813384 - 32813512
Alignment:
Q  179 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 278  Q
    |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32813384 gctcgcaaagccattgaagctaagcagctttgattacttgaagaagaagttaggaatggttgaagcatctaactaaatgaattaaggaggtgtattggtt 32813483  T
Q  279 tagtaattcagtttagttagttttagctt 307  Q
    |||||||||||||||||||||||||||||    
T  32813484 tagtaattcagtttagttagttttagctt 32813512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 411 - 592
Target Start/End: Original strand, 55418487 - 55418667
Alignment:
Q  411 tccagttatatatatactcactcatgtgttgtaaatagatgacaattcatt-caataaaattacacaagtcttttactcatatctctgttctctctcaaa 509  Q
    ||||||| ||||||||||||||||||| ||||||||| | ||| ||||||| |||||||||||||||||||||||||||||  |||| ||||||||||||    
T  55418487 tccagttgtatatatactcactcatgtattgtaaatatacgacgattcatttcaataaaattacacaagtcttttactcat--ctcttttctctctcaaa 55418584  T
Q  510 accatagaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    |||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |  |||||||||||||||| ||||||    
T  55418585 accatataaacccagaatctcaattccatcttcttcaattgaacacaattttaagtaccggtttcattctaatttcatacatt 55418667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 183 - 298
Target Start/End: Original strand, 27237112 - 27237227
Alignment:
Q  183 acaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtttagt 282  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27237112 acaaagccattgaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattagtttagt 27237211  T
Q  283 aattcagtttagttag 298  Q
    ||||||||||||||||    
T  27237212 aattcagtttagttag 27237227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 303 - 436
Target Start/End: Original strand, 4315552 - 4315685
Alignment:
Q  303 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 402  Q
    |||||||||||| ||  |||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4315552 agcttctgaagtgcagcttctgatggcttcagaagcagagtctagtaacaaacgttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 4315651  T
Q  403 ttacaatgtccagttatatatatactcactcatg 436  Q
    |||||| |||||||| ||||||||||||||||||    
T  4315652 ttacaacgtccagttgtatatatactcactcatg 4315685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 320 - 447
Target Start/End: Complemental strand, 28920397 - 28920270
Alignment:
Q  320 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 419  Q
    |||||||||||| ||||||| ||||||||||| || |||||||||| ||||||||| |||||||||||| |||||||||||||||| || |||||||| |    
T  28920397 ttctgatgtcttcagaagcatagtctagtaatcaatcttggttagcatgttaaccagggtagttagtttattagaggagtttgttataacgtccagttgt 28920298  T
Q  420 atatatactcactcatgtgttgtaaata 447  Q
    |||||||||||||||| |||||||||||    
T  28920297 atatatactcactcatatgttgtaaata 28920270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 323 - 417
Target Start/End: Original strand, 32813598 - 32813692
Alignment:
Q  323 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagtt 417  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  32813598 tgatgtctttagaagcagaatctagtaacaaaccttggttagcgtgttaacgaaggtagttagtttgttagaggagtttgttacaacgtccagtt 32813692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 453 - 578
Target Start/End: Original strand, 27237725 - 27237855
Alignment:
Q  453 caattcattcaataaaattacacaagtcttttactcatatctctgtt-ctctctcaaaaccata----gaaaccc-agaatctcaattccatcttcttca 546  Q
    |||||||||||||||| || |||||||||||||||||||||||| || ||||||||||||||||    ||||||| ||||||||||||||||||||||||    
T  27237725 caattcattcaataaattt-cacaagtcttttactcatatctctctttctctctcaaaaccatatatagaaaccctagaatctcaattccatcttcttca 27237823  T
Q  547 attgaactcagttttaagtgctagtttcattc 578  Q
    ||||||| |||||||||||| | |||||||||    
T  27237824 attgaacacagttttaagtgttggtttcattc 27237855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 303 - 373
Target Start/End: Original strand, 55418408 - 55418478
Alignment:
Q  303 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaac 373  Q
    ||||||| ||| |||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  55418408 agcttctaaagaacagcttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaac 55418478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 531731 - 531688
Alignment:
Q  271 tattggtttagtaattcagtttagttagttttagcttctgaagt 314  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  531731 tattggtttagtaattcagtatagttagttttagcttctgaagt 531688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 55418362 - 55418403
Alignment:
Q  271 tattggtttagtaattcagtttagttagttttagcttctgaa 312  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  55418362 tattggtttagtaatttagtttagttagttttagcttctgaa 55418403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 4315482 - 4315518
Alignment:
Q  271 tattggtttagtaattcagtttagttagttttagctt 307  Q
    |||||||||||||||||||||||||||||||||||||    
T  4315482 tattggtttagtaattcagtttagttagttttagctt 4315518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 32813091 - 32813127
Alignment:
Q  271 tattggtttagtaattcagtttagttagttttagctt 307  Q
    |||| ||||||||||||||||||||||||||||||||    
T  32813091 tattagtttagtaattcagtttagttagttttagctt 32813127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 307
Target Start/End: Original strand, 11171985 - 11172016
Alignment:
Q  276 gtttagtaattcagtttagttagttttagctt 307  Q
    ||||||||||||||||||||||||||||||||    
T  11171985 gtttagtaattcagtttagttagttttagctt 11172016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 305 - 592
Target Start/End: Complemental strand, 22582480 - 22582189
Alignment:
Q  305 cttctgaagtacaatttctgatgtctttagaagcag---agtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 401  Q
    |||||||||||||| |||||||||||| | ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22582480 cttctgaagtacaacttctgatgtcttcaaaagcagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 22582381  T
Q  402 gttacaatgtccagttatatatatactcactcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctctgttct 501  Q
    | ||||| |||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||| |  |||    
T  22582380 ggtacaacgtccagttgtatatatactcactcatgtgttgtaaataaatgagaattcattcaataaaattacacaagccttttactcatatcttttctct 22582281  T
Q  502 ctctcaaaaccatagaaaccc-agaatctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||||||||| ||||||    
T  22582280 ctctcaaaaccatagaaaccctagaatctcaatttcatcttcttcaattgaactcaattttaaatgctggtttcattctaatttcatacatt 22582189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 453 - 578
Target Start/End: Complemental strand, 35324014 - 35323887
Alignment:
Q  453 caattcattcaataaaattacacaagtcttttactcatatctctgtt-ctctctcaaaaccatagaaaccc-agaatctcaattccatcttcttcaattg 550  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35324014 caattcattcaataaaattacacaagtcttttactcatatctctctttctctctcaaaaccatagaaaccctagaatctcaattccatcttcttcaattg 35323915  T
Q  551 aactcagttttaagtgctagtttcattc 578  Q
    ||| |||||||||||| | |||||||||    
T  35323914 aacacagttttaagtgttggtttcattc 35323887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 303 - 435
Target Start/End: Original strand, 45937828 - 45937960
Alignment:
Q  303 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 402  Q
    |||||||||||| ||  || ||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45937828 agcttctgaagtgcagcttttgatgtcttcaaaagcagggtctagtaataaaccttggttagcgtgttaaccaaggtagttagttagttagaggagtttg 45937927  T
Q  403 ttacaatgtccagttatatatatactcactcat 435  Q
    |||||| |||||||| |||||||||||||||||    
T  45937928 ttacaacgtccagttgtatatatactcactcat 45937960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 320 - 432
Target Start/End: Original strand, 297081 - 297193
Alignment:
Q  320 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 419  Q
    |||||||||||| |||| | |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |    
T  297081 ttctgatgtcttcagaaactgagtttagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaacgtctagttgt 297180  T
Q  420 atatatactcact 432  Q
    |||||||||||||    
T  297181 atatatactcact 297193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 323 - 440
Target Start/End: Original strand, 293191 - 293308
Alignment:
Q  323 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatata 422  Q
    ||||||||| |||| | |||| |||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||    
T  293191 tgatgtcttcagaaactgagtttagtaacaaacattggttagcgtgttaaccaaggtagttagtttgttagaggggtttgttacaacgtctagttgtata 293290  T
Q  423 tatactcactcatgtgtt 440  Q
    ||||||||||||| ||||    
T  293291 tatactcactcatatgtt 293308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 514 - 592
Target Start/End: Original strand, 35703408 - 35703486
Alignment:
Q  514 tagaaacccagaatctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  35703408 tagaaacccagaatctcaattctatcttcttcaattgaactcagttttaagtgctggtttcattctaatttcatacatt 35703486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 271 - 303
Target Start/End: Complemental strand, 22582580 - 22582548
Alignment:
Q  271 tattggtttagtaattcagtttagttagtttta 303  Q
    |||||||||||||||||||||||||||||||||    
T  22582580 tattggtttagtaattcagtttagttagtttta 22582548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 320 - 592
Target Start/End: Original strand, 11096136 - 11096406
Alignment:
Q  320 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 419  Q
    |||||||||||| |||||  ||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |    
T  11096136 ttctgatgtcttcagaag--gagtctagtaacaaactttggttagcgtgttaatcaaggtagttagtttgttagaggagtttgttacaacgttcagttgt 11096233  T
Q  420 atatatactcactcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctctgttctctctcaaaaccatagaaa 519  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||    
T  11096234 atatatactcactcatgtgttgtaaatatatgacaattcattcaataaaattacacaagtcttttactcatatctattttttctctcaaaaccatagaaa 11096333  T
Q  520 cccagaatctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    ||||  |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| ||||||    
T  11096334 cccatcatctcaattccatcttcttcaattgaacacagttttaagtgttggtttcattctaatttcatacatt 11096406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 303 - 447
Target Start/End: Complemental strand, 37186932 - 37186788
Alignment:
Q  303 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 402  Q
    |||||||||||| ||  |||||||||||||||||||||||||||||||||||| |||| ||  |||||||||| ||||||||||||||||||||||||||    
T  37186932 agcttctgaagtgcagcttctgatgtctttagaagcagagtctagtaataaacattggctatagtgttaaccagggtagttagtttgttagaggagtttg 37186833  T
Q  403 ttacaatgtccagttatatatatactcactcatgtgttgtaaata 447  Q
    |||||| ||| |||| |||||||||||||||||||||||||||||    
T  37186832 ttacaacgtctagttgtatatatactcactcatgtgttgtaaata 37186788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 323 - 447
Target Start/End: Complemental strand, 37786705 - 37786581
Alignment:
Q  323 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatata 422  Q
    ||||||||| | ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| ||||    
T  37786705 tgatgtcttcataagcagagtctagtaaccaaccttggttagcgtgttaaccagggtagttagtttgttagaggactttgttacaacgtccagttgtata 37786606  T
Q  423 tatactcactcatgtgttgtaaata 447  Q
    |||| ||||||||||||||||||||    
T  37786605 tatattcactcatgtgttgtaaata 37786581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 453 - 592
Target Start/End: Original strand, 14685441 - 14685577
Alignment:
Q  453 caattcattcaataaaattacacaagtcttttactcatatctctgttctctctcaaaaccatagaaaccc-agaatctcaattccatcttcttcaattga 551  Q
    |||||||||||||||| ||  ||||||||||||||||| ||||| |   |||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  14685441 caattcattcaataaatttt-acaagtcttttactcatctctcttt---ctcttaaaaccatagaaaccctagaatctcaattccatcttcttcaattga 14685536  T
Q  552 actcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    || |||||||||||| | ||||||||| | |||| ||||||    
T  14685537 acacagttttaagtgttggtttcattcaattttcatacatt 14685577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 302 - 417
Target Start/End: Complemental strand, 37791296 - 37791182
Alignment:
Q  302 tagcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 401  Q
    |||||||||| || ||  |||||||||||| ||||||||||| ||||||  ||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  37791296 tagcttctgatgtgcagcttctgatgtcttcagaagcagagt-tagtaaccaaccttgattagcatgttaaccaaggtagttagtttgttagaggagttt 37791198  T
Q  402 gttacaatgtccagtt 417  Q
    ||||||| || |||||    
T  37791197 gttacaacgttcagtt 37791182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 14685248 - 14685281
Alignment:
Q  271 tattggtttagtaattcagtttagttagttttag 304  Q
    ||||||||||||||||||||||||||||||||||    
T  14685248 tattggtttagtaattcagtttagttagttttag 14685281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 11096073 - 11096116
Alignment:
Q  271 tattggtttagtaattcagtttagttagttttagcttctgaagt 314  Q
    ||||| |||| |||||||||||||||||||||| ||||||||||    
T  11096073 tattgatttaataattcagtttagttagttttaacttctgaagt 11096116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 177; Significance: 5e-95; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 323 - 592
Target Start/End: Original strand, 53011169 - 53011441
Alignment:
Q  323 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatata 422  Q
    ||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||    
T  53011169 tgatgtcttcagaagcagagtctagtaacaaacattggttagcgtgttaaccaaggtagttagtttgttagaggattttgttaaaacgtccagttgtata 53011268  T
Q  423 tatactcac-tcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctct-gttctctctcaaaaccatagaaac 520  Q
    ||||||||| || ||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||    
T  53011269 tatactcacttcctgtgttgtaaatatatgccaattcattcaataaaattacacaagtcttttattcatatctctctttctctctcaaaaccatagaaac 53011368  T
Q  521 cc-agaatctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    || |||||||| ||| |||||||||||||||||| |||||||||||| | |||||||||||||||| ||||||    
T  53011369 cctagaatctctatttcatcttcttcaattgaacacagttttaagtgttggtttcattctaatttcatacatt 53011441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 179 - 384
Target Start/End: Original strand, 56563055 - 56563260
Alignment:
Q  179 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 278  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  56563055 gctcacaaagccattgaagctaagcagctttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaagtgtattggtt 56563154  T
Q  279 tagtaattcagtttagttagttttagcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaagg 378  Q
    || |||||||||||||||||||||||||| |||||| ||  |||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||    
T  56563155 taataattcagtttagttagttttagcttatgaagtgcagcttctgatgtcttcagaagcagagtctactaacaaaccttggttagcgtgttaaccaagg 56563254  T
Q  379 tagtta 384  Q
    ||||||    
T  56563255 tagtta 56563260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 302 - 585
Target Start/End: Original strand, 53008256 - 53008540
Alignment:
Q  302 tagcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 401  Q
    ||||||||||||||||  |||||||||||| |||||||||||||||||| |||| ||||||||||| ||||||||  |||||||||||||||||||||||    
T  53008256 tagcttctgaagtacagcttctgatgtcttcagaagcagagtctagtaacaaacattggttagcgtattaaccaaactagttagtttgttagaggagttt 53008355  T
Q  402 gttacaatgtccagttatatatatactcac-tcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctct-gtt 499  Q
    ||||||| |||||||| ||||||||||||| || ||||||||||||| ||| ||||| |||||||||||||  |||||||||||| ||||||||||  ||    
T  53008356 gttacaacgtccagttgtatatatactcacttcctgtgttgtaaatatatgccaattaattcaataaaatt--acaagtcttttattcatatctctcttt 53008453  T
Q  500 ctctctcaaaaccatagaaaccc-agaatctcaattccatcttcttcaattgaactcagttttaagtgctagtttcattctaatttc 585  Q
    ||||||||||||||||||||||| | |||||  ||||||||||||||||| |||| || ||||||||| | ||||||||||||||||    
T  53008454 ctctctcaaaaccatagaaaccctaaaatctttattccatcttcttcaatggaacacaattttaagtgttggtttcattctaatttc 53008540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 180 - 307
Target Start/End: Original strand, 53010974 - 53011101
Alignment:
Q  180 ctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggttt 279  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53010974 ctcacaaagccattgaagctaagcagctttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggttt 53011073  T
Q  280 agtaattcagtttagttagttttagctt 307  Q
    ||||||||||||||||||||||||||||    
T  53011074 agtaattcagtttagttagttttagctt 53011101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 465 - 592
Target Start/End: Complemental strand, 28571476 - 28571349
Alignment:
Q  465 taaaattacacaagtcttttactcatatctctgttctctctcaaaaccatagaaacccagaatctcaattccatcttcttcaattgaactcagttttaag 564  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||  || |||||||||||||||||||||||||||||  |||||||||    
T  28571476 taaaattacacaagtcttttacttatatctcttttctctctcaaaatcatagaaattcaaaatctcaattccatcttcttcaattgaacatagttttaag 28571377  T
Q  565 tgctagtttcattctaatttcttacatt 592  Q
    || | |||||||||||||||| ||||||    
T  28571376 tgttggtttcattctaatttcatacatt 28571349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 338 - 447
Target Start/End: Original strand, 5715318 - 5715427
Alignment:
Q  338 cagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcactcatgt 437  Q
    ||||||||||||| ||||||||||||||||||||||||   || ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  5715318 cagagtctagtaacaaaccttggttagcgtgttaaccagaataattagtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgt 5715417  T
Q  438 gttgtaaata 447  Q
    ||||||||||    
T  5715418 gttgtaaata 5715427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 328 - 430
Target Start/End: Complemental strand, 16854078 - 16853976
Alignment:
Q  328 tctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatac 427  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| |||||||||    
T  16854078 tcttcagaagcagagtctagtaacaaaccttggttagcgtgttaaccaacgtagttagtttgttagaggaatttgttacaacgtccagttgtatatatac 16853979  T
Q  428 tca 430  Q
    |||    
T  16853978 tca 16853976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 323 - 447
Target Start/End: Original strand, 50935665 - 50935784
Alignment:
Q  323 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatata 422  Q
    ||||||||| |||||  ||||||||||| |||| |||||||||||||||||||||||||||||||    |||||||||||||||||  || |||| ||||    
T  50935665 tgatgtcttcagaagttgagtctagtaacaaac-ttggttagcgtgttaaccaaggtagttagtt----agaggagtttgttacaacatctagttgtata 50935759  T
Q  423 tatactcactcatgtgttgtaaata 447  Q
    |||||||||||||||||||||||||    
T  50935760 tatactcactcatgtgttgtaaata 50935784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 303 - 445
Target Start/End: Original strand, 50911862 - 50912000
Alignment:
Q  303 agcttctgaagtacaatttctgatgtctttagaagca-gagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 401  Q
    ||||||||| || ||  |||||||||||| ||||||  ||||||||||| |||| ||||||||||| |||||||||||||||||||    ||||||||||    
T  50911862 agcttctgatgtgcagattctgatgtcttcagaagcttgagtctagtaacaaac-ttggttagcgtattaaccaaggtagttagtt----agaggagttt 50911956  T
Q  402 gttacaatgtccagttatatatatactcactcatgtgttgtaaa 445  Q
    |||||||   |||||| |||||||||||||||||||||||||||    
T  50911957 gttacaacacccagttgtatatatactcactcatgtgttgtaaa 50912000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 53008159 - 53008195
Alignment:
Q  271 tattggtttagtaattcagtttagttagttttagctt 307  Q
    |||||||||||||||||||||||||||||||||||||    
T  53008159 tattggtttagtaattcagtttagttagttttagctt 53008195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 100; Significance: 5e-49; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 320 - 447
Target Start/End: Original strand, 49388 - 49515
Alignment:
Q  320 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 419  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |    
T  49388 ttctgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagagaagtttgttacaacgtctagttgt 49487  T
Q  420 atatatactcactcatgtgttgtaaata 447  Q
    ||||||||||||||||||||||||||||    
T  49488 atatatactcactcatgtgttgtaaata 49515  T

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Target: chr1 (Bit Score: 88; Significance: 7e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 320 - 447
Target Start/End: Complemental strand, 44541486 - 44541359
Alignment:
Q  320 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 419  Q
    ||||| |||||| ||||||| |||||| |||  ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  44541486 ttctgttgtcttcagaagcatagtctaataaccaaccttgattagtgtgttaaccagggtagttagtttgttagaggagtttgttacaatgtccagttgt 44541387  T
Q  420 atatatactcactcatgtgttgtaaata 447  Q
    ||||||||||||||||||||||||||||    
T  44541386 atatatactcactcatgtgttgtaaata 44541359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 453 - 592
Target Start/End: Original strand, 10917022 - 10917162
Alignment:
Q  453 caattcattcaataaaattacacaagtcttttactcatatctctgtt-ctctctcaaaaccatagaaaccc-agaatctcaattccatcttcttcaattg 550  Q
    |||||||||||||||| || ||| |||||||||||||||||||| || |||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  10917022 caattcattcaataaattt-caccagtcttttactcatatctctctttctctctcaaaactatagaaaccctagaatctcaattccatcttcttcaattg 10917120  T
Q  551 aactcagttttaagtgctagtttcattctaatttcttacatt 592  Q
    ||| || ||||||||| | ||||||||| | |||| ||||||    
T  10917121 aacacaattttaagtgttggtttcattcaattttcatacatt 10917162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 28451093 - 28451021
Alignment:
Q  201 agcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtatt 274  Q
    ||||||||||| ||||||| ||| ||  ||||||||| |||||   |||||||| |||||||||||||||||||    
T  28451093 agcaactttgaatacttgaggaacaatctaggaatggttgaagtcactaactaa-tgaattaaggaggtgtatt 28451021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 536 - 578
Target Start/End: Original strand, 34602 - 34644
Alignment:
Q  536 catcttcttcaattgaactcagttttaagtgctagtttcattc 578  Q
    |||||||||||||||||| |||||||||||| | |||||||||    
T  34602 catcttcttcaattgaacacagttttaagtgttggtttcattc 34644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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