View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3722_low_3 (Length: 409)
Name: NF3722_low_3
Description: NF3722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3722_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 36955399 - 36955778
Alignment:
| Q |
18 |
aagatgaagatagagacaaagccaaagccttacgttacaaaatagcagctttagtgtcaattttagttgcaagtgcaattggtgtttttatcccacttct |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36955399 |
aagatgaagatagagacaaagccaaagccttacgttacaaaatagcagctttagtgtcaattttagttgtaagtgcaattggtgtttttatcccacttct |
36955498 |
T |
|
| Q |
118 |
tggcaaagtaataccggcgttaagccctgaaaaagatatatttttcatcattaaaacctttgctgccggtgtgatattatccaccggtttcattcatgtg |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36955499 |
tggcaaagtaataccggcgttaagccctgaaaaagatatatttttcatcattaaaacctttgctgccggtgtgatattatccaccggtttcattcatgtg |
36955598 |
T |
|
| Q |
218 |
cttcctgatgcttttgagaatcttacttcaccttgtttaaaggaacatccttggggtgattttccattcaccggttttgtggctatgtgcactgctatgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36955599 |
cttcctgatgcttttgagaatcttacttcaccttgtttaaaggaacatccttggggtgattttccattcaccggttttgtggctatgtgcactgctatgg |
36955698 |
T |
|
| Q |
318 |
ggtctctcatggttgatacttatgccaccgcttattttcagaatcgttattctaaaagggcatcaacgttgacacaggtt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
36955699 |
ggtctctcatggttgatacttatgccaccgcttattttcagaatcgtcattctaaaaaggcatcaacgttgacacaggtt |
36955778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 25 - 379
Target Start/End: Original strand, 36938694 - 36939048
Alignment:
| Q |
25 |
agatagagacaaagccaaagccttacgttacaaaatagcagctttagtgtcaattttagttgcaagtgcaattggtgtttttatcccacttcttggcaaa |
124 |
Q |
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||||||||||||| ||||||| | ||||| || |||||||||||||| ||||| ||||||||||||| ||||||||||| ||| ||||||||||||||| |
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| T |
36938694 |
agatagagacaaacccaaagctcttcgttataagatagcagctttagtatcaatattagttgcaagtggaattggtgtttgtattccacttcttggcaaa |
36938793 |
T |
|
| Q |
125 |
gtaataccggcgttaagccctgaaaaagatatatttttcatcattaaaacctttgctgccggtgtgatattatccaccggtttcattcatgtgcttcctg |
224 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||| || | ||||||||||||||||||||||||| |
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| T |
36938794 |
gtgataccggcgttaagccccgaaaaagatatatttttcatcatcaaagcctttgctgctggtgtgattttggcaaccggtttcattcatgtgcttcctg |
36938893 |
T |
|
| Q |
225 |
atgcttttgagaatcttacttcaccttgtttaaaggaacatccttggggtgattttccattcaccggttttgtggctatgtgcactgctatggggtctct |
324 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
36938894 |
atgcttttgagaatcttacttcacctcgtttaaagaaacatccttggggtgattttccattcactggttttgtggctatgtgcactgctatggggactct |
36938993 |
T |
|
| Q |
325 |
catggttgatacttatgccaccgcttattttcagaatcgttattctaaaagggca |
379 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || | |||||| |||| |||| |
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|
| T |
36938994 |
tatggttgatacttatgccactgcttattttcaaaaccattattccaaaaaggca |
36939048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 36993080 - 36993441
Alignment:
| Q |
18 |
aagatgaagatagagacaaagccaaagccttacgttacaaaatagcagctttagtgtcaattttagttgcaagtgcaattggtgtttttatcccacttct |
117 |
Q |
| |
|
|||||||||| || |||| | | ||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| | |||||||||| |
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|
| T |
36993080 |
aagatgaagaaagggacagatcaaaagctctacgctacaaaatagcggctttagtgtcaatattagttgcaagtgcaattggtgtttgtctcccacttct |
36993179 |
T |
|
| Q |
118 |
tggcaaagtaataccggcgttaagccctgaaaaagatatatttttcatcattaaaacctttgctgccggtgtgatattatccaccggtttcattcatgtg |
217 |
Q |
| |
|
||| ||||| |||||||| |||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
36993180 |
tgggaaagtgataccggcattaagccctgaaaaagatatattttttatcatcaaagcatttgctgccggtgtgatactgtccaccggtttcattcatgtg |
36993279 |
T |
|
| Q |
218 |
cttcctgatgcttttgagaatcttacttcaccttgtttaaaggaacatccttggggtgattttccattcaccggttttgtggctatgtgcactgctatgg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| |
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|
| T |
36993280 |
cttcctgatgcttttgagaatcttacttctccatgtttaaacgaacatccttggggtgattttcccttcactggttttgtagctatgtgcaccgctatgg |
36993379 |
T |
|
| Q |
318 |
ggtctctcatggttgatacttatgccaccgcttattttcagaatcgttattctaaaagggca |
379 |
Q |
| |
|
|| |||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||| |
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|
| T |
36993380 |
ggactcttatggttgatacttatgcaaccgcttattttcagaaccattattctaaaagggca |
36993441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 37018520 - 37018881
Alignment:
| Q |
18 |
aagatgaagatagagacaaagccaaagccttacgttacaaaatagcagctttagtgtcaattttagttgcaagtgcaattggtgtttttatcccacttct |
117 |
Q |
| |
|
|||||||||| || |||| | | ||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| | |||||||||| |
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|
| T |
37018520 |
aagatgaagaaagggacagatcaaaagctctacgctacaaaatagcggctttagtgtcaatattagttgcaagtgcaattggtgtttgtctcccacttct |
37018619 |
T |
|
| Q |
118 |
tggcaaagtaataccggcgttaagccctgaaaaagatatatttttcatcattaaaacctttgctgccggtgtgatattatccaccggtttcattcatgtg |
217 |
Q |
| |
|
||| ||||| |||||||| |||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||| | ||||||||||||||||||||| |
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| T |
37018620 |
tgggaaagtgataccggcattaagccctgaaaaagatatattttttatcatcaaagcatttgctgccggtgtgatactgtccaccggtttcattcatgtg |
37018719 |
T |
|
| Q |
218 |
cttcctgatgcttttgagaatcttacttcaccttgtttaaaggaacatccttggggtgattttccattcaccggttttgtggctatgtgcactgctatgg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| |
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|
| T |
37018720 |
cttcctgatgcttttgagaatcttacttctccatgtttaaacgaacatccttggggtgattttcccttcactggttttgtagctatgtgcaccgctatgg |
37018819 |
T |
|
| Q |
318 |
ggtctctcatggttgatacttatgccaccgcttattttcagaatcgttattctaaaagggca |
379 |
Q |
| |
|
|| |||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||| |
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|
| T |
37018820 |
ggactcttatggttgatacttatgcaaccgcttattttcagaaccattattctaaaagggca |
37018881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 36950912 - 36951228
Alignment:
| Q |
18 |
aagatgaagatagagacaaagccaaagccttacgttacaaaatagcagctttagtgtcaattttagttgcaagtgcaattggtgtttttatcccacttct |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||| | ||||| || |||||||||||||| ||||| |||||||||||| ||||||||||| ||| |||||||| |
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|
| T |
36950912 |
aagatgaagatagagacaaatccaaagcccttcgttataagatagcagctttagtatcaatactagttgcaagtggaattggtgtttgtattccacttct |
36951011 |
T |
|
| Q |
118 |
tggcaaagtaataccggcgttaagccctgaaaaagatatatttttcatcattaaaacctttgctgccggtgtgatattatccaccggtttcattcatgtg |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| || |||||||||||||||| ||| |
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|
| T |
36951012 |
aggcaaagtgataccggcgttaagccctgaaaaagatatatttttcattattaaagcctttgctgctggtgtgattttggccaccggtttcattcacgtg |
36951111 |
T |
|
| Q |
218 |
cttcctgatgcttttgagaatcttacttcaccttgtttaaaggaacatccttggggtgattttccattcaccggttttgtggctatgtgcactgctatgg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
36951112 |
cttcctgatgcttttgagaatcttacttcacc-tgtttaaaggaacatccttggggtgattttccattcaccggttttgtggctatgtgcactgccatgg |
36951210 |
T |
|
| Q |
318 |
ggtctctcatggttgata |
335 |
Q |
| |
|
|| ||| |||||||||| |
|
|
| T |
36951211 |
ggattcttatggttgata |
36951228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 148 - 301
Target Start/End: Complemental strand, 36951438 - 36951288
Alignment:
| Q |
148 |
aaaagatatatttttcatcattaaaacctttgctgccggtgtgatattatccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttca |
247 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
36951438 |
aaaagatatatttttcatcattaaagcctttgctg---gtgtgattttggccaccggtttcattcacgtgcttcctgatgcttttgagaatcttacttca |
36951342 |
T |
|
| Q |
248 |
ccttgtttaaaggaacatccttggggtgattttccattcaccggttttgtggct |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36951341 |
ccttgtttaaaggaacatccttggggtgattttccattcaccggttttgtggct |
36951288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 312
Target Start/End: Complemental strand, 36951288 - 36951250
Alignment:
| Q |
274 |
tgattttccattcaccggttttgtggctatgtgcactgc |
312 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
36951288 |
tgattttccattcaccggttttgtggctatgtgcactgc |
36951250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 283
Target Start/End: Complemental strand, 27253541 - 27253396
Alignment:
| Q |
138 |
taagccctgaaaaagatatatttttcatcattaaaacctttgctgccggtgtgatattatccaccggtttcattcatgtgcttcctgatgcttttgagaa |
237 |
Q |
| |
|
|||||||| |||| || ||||||||||| |||||| |||| || |||||||| || || | |||||||| ||||| | ||||| ||||| || |||| |
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|
| T |
27253541 |
taagccctaaaaatgacatatttttcatgattaaagccttcgcggccggtgtaattttggcaaccggttttattcacatacttccggatgcattcgagag |
27253442 |
T |
|
| Q |
238 |
tcttacttcaccttgtttaaaggaacatccttggggtgattttcca |
283 |
Q |
| |
|
| | | ||| |||||| | |||||| | |||||||||||||||||| |
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|
| T |
27253441 |
tttgaattcgccttgtcttaaggaaaaaccttggggtgattttcca |
27253396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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