View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3722_low_6 (Length: 340)
Name: NF3722_low_6
Description: NF3722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3722_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 20631706 - 20631401
Alignment:
| Q |
16 |
atacggggacttggatgcaaactatacaataatcgtatcagtttccaactagaagttaggaaatagccagacagcaaatatacaaacagtcctggaaata |
115 |
Q |
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| T |
20631706 |
atacagggacttgaatgcaaactatacaataatcgaatcagtttccaactagaagttaggaaatagccagacaacaaatatccaaacagtcctggaaata |
20631607 |
T |
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| Q |
116 |
aattccctcaaatgtagaatatgaaacaaccacattgtattatttaaacttaatcaaaatggtgcaggttttgagcttttaagagtcttatgttctttag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
20631606 |
aattccctcaaatgtagaatatgaaacaaccacattgtattatttaaacttaatcaaaatggtgcaagtttggagcttttaagagtcttatgttctttag |
20631507 |
T |
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| Q |
216 |
ttttaagttatatttgctgttggttcagataccgaatctacgaaaaaacattaataaagatgtctcatatacatattacggtcgtccactccacatagaa |
315 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
20631506 |
ttttaagttatatttgtcgttggttcagataccgaatcta-gaaaaaacattaataaagatgtctcatttatatattacggtcgtccactccacatagaa |
20631408 |
T |
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| Q |
316 |
ccaaaac |
322 |
Q |
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||||||| |
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| T |
20631407 |
ccaaaac |
20631401 |
T |
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