View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3722_low_7 (Length: 324)
Name: NF3722_low_7
Description: NF3722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3722_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 37993827 - 37994123
Alignment:
| Q |
17 |
acatggtatggtgttttttgcgacaaacaaacctaccgtgtcagcacccttgatctccaggacctcgaccttcctcaccctgttccaattccaccctcca |
116 |
Q |
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| T |
37993827 |
acatggtatggtgttttttgcgacaaacaaacctaccgtgtcagcacccttgatctccaggacctcgaccttcctcaccctgttccaattccaccctcca |
37993926 |
T |
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| Q |
117 |
tattcaacctccctttcctcttatacctcactctcatgaacacacccaacctcgtcggaactatccctccctccatatccaacctcaccaaactcaattc |
216 |
Q |
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| T |
37993927 |
tattcaacctccctttcctcttatacctcactctcatgaacacacccaacctcgtcggaactatccctccctccatatccaacctcaccaaactcaattc |
37994026 |
T |
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| Q |
217 |
catctacatcatccaaaccaacatctccggcgagatacctaacactctctcagagatcaaaaccctagtaagcatcgacatcagcgacaacaaactc |
313 |
Q |
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| T |
37994027 |
catctacatcatccaaaccaacatctccggcgagatacctaacactctctcagagatcaaaaccctagtaaccatcgacatcagcgacaacaaactc |
37994123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 177 - 292
Target Start/End: Original strand, 37989803 - 37989918
Alignment:
| Q |
177 |
ctatccctccctccatatccaacctcaccaaactcaattccatctacatcatccaaaccaacatctccggcgagatacctaacactctctcagagatcaa |
276 |
Q |
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|||||||||| ||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |
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| T |
37989803 |
ctatccctccttccatctccaaactctccaaactcaattatatctacatcatccaaaccaacatctccggggagataccttacactctctcacagatcaa |
37989902 |
T |
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| Q |
277 |
aaccctagtaagcatc |
292 |
Q |
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| T |
37989903 |
aacactagtaaccatc |
37989918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 38013577 - 38013656
Alignment:
| Q |
233 |
accaacatctccggcgagatacctaacactctctcagagatcaaaaccctagtaagcatcgacatcagcgacaacaaact |
312 |
Q |
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||||||||||||||||||||||| ||||| |||||| |||||||||| || || |||||||| || | |||||||||| |
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| T |
38013577 |
accaacatctccggcgagataccaaacaccctctcacagatcaaaacgctcttacgcatcgacttctacaacaacaaact |
38013656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 37697509 - 37697429
Alignment:
| Q |
233 |
accaacatctccggcgagatacctaacactctctcagagatcaaaaccctagtaagcatcgacatcagcgacaacaaactc |
313 |
Q |
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|||| |||||||||||||||||| |||||||| ||| | || ||||||||| || | |||||| ||| | ||||||||||| |
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| T |
37697509 |
accagcatctccggcgagataccaaacactctttcaaatatgaaaaccctattacggatcgacttcaccaacaacaaactc |
37697429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 38013407 - 38013478
Alignment:
| Q |
64 |
ccttgatctccaggacctcgaccttcctcaccctgttccaattccaccctccatattcaacctccctttcct |
135 |
Q |
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|||||||||| || |||| ||||| ||| | ||||||||||||||||||||||| |||||||||||||| |
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| T |
38013407 |
ccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctccatcgctaacctccctttcct |
38013478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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