View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3722_low_8 (Length: 244)
Name: NF3722_low_8
Description: NF3722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3722_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 31161515 - 31161727
Alignment:
| Q |
13 |
atcatcaagtgggtatcaaatgaaacaaaaattgttaatgctgctattgttattggcaggataatggatgatattgcatccaatgaggtataaatataaa |
112 |
Q |
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| T |
31161515 |
atcatcaagtgggtatcaaatgaaacaaaaattgttaatgctgctattgttattggcaggataatggatgacattgcatccaatgaggtataaatataaa |
31161614 |
T |
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| Q |
113 |
attttaatc-tttttttcaatgta-tttattannnnnnnnnnnggtattcggggttcgaacctcgtacacattgtccttaccaactgagttaagcccata |
210 |
Q |
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| T |
31161615 |
attttaatcttttttttcaatgtattttatt------ttttttggtattcggagttcgaatctcgtacgcattgtccttaccaactgagttaagcccaca |
31161708 |
T |
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| Q |
211 |
gagacaatgcgtttgtttt |
229 |
Q |
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||||||||||||||||||| |
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| T |
31161709 |
gagacaatgcgtttgtttt |
31161727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 41349749 - 41349656
Alignment:
| Q |
17 |
tcaagtgggtatcaaatgaaacaaaaattgttaatgctgctattgttattggcaggataatggatgatattgcatccaatgaggtataaatata |
110 |
Q |
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| T |
41349749 |
tcaaatgggtatcaaatgagtcaaaaattattaatgctgctattgtcctttgcaggataatggatgatattgtatccaacgaggtatatatata |
41349656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 31201315 - 31201421
Alignment:
| Q |
9 |
ggacatcatcaagtgggtatcaaatgaaacaaaaattgttaatgctgctattgttattggcaggataatggatgatattgcatccaatgaggtataaata |
108 |
Q |
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| T |
31201315 |
ggacatcttcaagtgggtatcaaatgatccaaaagttattaatgctgcaattatcattggaaggttaatggatgacattgtgtccaatgaggtacatata |
31201414 |
T |
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| Q |
109 |
taaaatt |
115 |
Q |
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||||||| |
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| T |
31201415 |
taaaatt |
31201421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 4314914 - 4314819
Alignment:
| Q |
17 |
tcaagtgggtatcaaatgaaacaaaaattgttaatgctgctattgttattggcaggataatggatgatattgcatccaatgaggtataaatataaa |
112 |
Q |
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| T |
4314914 |
tcaagtgggtatcaaatggaataaaaatgatcaatgctgctattatcctttgcaggctaatggatgatattgcatccaacgaggtatgaagataaa |
4314819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 25794000 - 25794101
Alignment:
| Q |
10 |
gacatcatcaagtgggtatcaaatgaaacaaaaattgttaatgctgctattgttattggcaggataatggatgatattgcatccaatgaggtataaatat |
109 |
Q |
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|||||| |||||||| |||||||||| |||||||| |||||||| || |||| || ||||| |||||||||| |||| |||||||||||||| |||| |
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| T |
25794000 |
gacatcttcaagtggatatcaaatgagccaaaaattcttaatgcttctgttgtactttgcaggctaatggatgacattgtgtccaatgaggtatatatat |
25794099 |
T |
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| Q |
110 |
aa |
111 |
Q |
| |
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|| |
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| T |
25794100 |
aa |
25794101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 28757055 - 28757092
Alignment:
| Q |
179 |
acattgtccttaccaactgagttaagcccatagagaca |
216 |
Q |
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| T |
28757055 |
acattgtccttaccaactgagttaagctcacagagaca |
28757092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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