View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3723_high_2 (Length: 264)
Name: NF3723_high_2
Description: NF3723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3723_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 1044083 - 1044328
Alignment:
| Q |
1 |
ggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcacctt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1044083 |
ggtggatccctcgagaatcgttgtcgatttcctttggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcacctt |
1044182 |
T |
|
| Q |
101 |
ttgcagaatatgcagaaagtaaagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1044183 |
ttgcagaatatgcagaaagcggagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggt |
1044282 |
T |
|
| Q |
201 |
ggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttac |
246 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
1044283 |
ggaaccaagaataaaatcagcttctgaaacgattgaaagcccttac |
1044328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 1033696 - 1033941
Alignment:
| Q |
1 |
ggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcacctt |
100 |
Q |
| |
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||||||||||| |||||||||||||||||| | ||||||||||||| || ||||||||||||||||||||||| | ||||||||||||| ||||||||| |
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| T |
1033696 |
ggtggatcccttgagaatcgttgtcgatttgcattggaagttgttgacgctgttgtgaatgagataggagcagaaagagttggaattagattatcacctt |
1033795 |
T |
|
| Q |
101 |
ttgcagaatatgcagaaagtaaagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggt |
200 |
Q |
| |
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|||| ||| || ||||| || |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1033796 |
ttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatgccctcaataagtacaatattctttactgtcacatggt |
1033895 |
T |
|
| Q |
201 |
ggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttac |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1033896 |
ggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttac |
1033941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 1640860 - 1640649
Alignment:
| Q |
1 |
ggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcacctt |
100 |
Q |
| |
|
|||||| |||| || || ||||||||||| || ||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||| |||| |||| |
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| T |
1640860 |
ggtggaacccttgaaaaccgttgtcgattcgctttggaaattgttgaagcagttgtgaatgagataggtgcagaaagagttggaattagattatcgcctt |
1640761 |
T |
|
| Q |
101 |
ttgcagaatatgcagaaagtaaagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggt |
200 |
Q |
| |
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| |||||||||| |||| || |||||||||||| | |||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
1640760 |
tcgcagaatatggagaatgtggagactccaatcctgaagaattggggctttatatggttaatgccctcagtaaatacaatattctttactgtcacatggt |
1640661 |
T |
|
| Q |
201 |
ggaaccaagaat |
212 |
Q |
| |
|
|||||||||||| |
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|
| T |
1640660 |
ggaaccaagaat |
1640649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 1071425 - 1071636
Alignment:
| Q |
1 |
ggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcacctt |
100 |
Q |
| |
|
||||||||||| ||||| |||||||| ||| || |||||||||||||||| |||| |||||||||||| |||| | ||||||||| ||| ||||||||| |
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|
| T |
1071425 |
ggtggatcccttgagaaccgttgtcggtttgctttggaagttgttgaagctgttgcaaatgagataggaacagaaagagttggaataagattatcacctt |
1071524 |
T |
|
| Q |
101 |
ttgcagaatatgcagaaagtaaagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggt |
200 |
Q |
| |
|
||||||| ||| ||||| || ||||||||| || || |||||||||||| |||||||||||||||||||||| ||| ||||||||| ||||||||||| |
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| T |
1071525 |
ttgcagagtattcagaatgtggagactccaaccctaaagaattgggactttatatggttaatgccctcaataaatacggtattctttattgtcacatggt |
1071624 |
T |
|
| Q |
201 |
ggaaccaagaat |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1071625 |
ggaaccaagaat |
1071636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 1065710 - 1065909
Alignment:
| Q |
13 |
gagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcaccttttgcagaatatg |
112 |
Q |
| |
|
||||| || ||||||||| || |||||||||||||||| |||| ||||||||||||||||| | ||||||||| ||| ||||||||||||| || |||| |
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|
| T |
1065710 |
gagaaccgctgtcgatttgctttggaagttgttgaagctgttgcaaatgagataggagcagaaagagttggaataagattatcaccttttgcggagtatg |
1065809 |
T |
|
| Q |
113 |
cagaaagtaaagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggtggaaccaagaat |
212 |
Q |
| |
|
||||| || ||||||||| |||||||||||||||||| ||||||| |||||||||||||| || ||||||||||||||| ||||||||||||||||| |
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|
| T |
1065810 |
cagaatgtggagactccaaccccaatgaattgggactttatatggtcaatgccctcaataaatatggtattctttactgtcatatggtggaaccaagaat |
1065909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 1058606 - 1058817
Alignment:
| Q |
1 |
ggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcacctt |
100 |
Q |
| |
|
||||||||||| ||||| |||||||| || | |||||||||||||||| |||| ||||||||||| ||||||| | |||||||||| ||||||||| |
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|
| T |
1058606 |
ggtggatcccttgagaaccgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctt |
1058705 |
T |
|
| Q |
101 |
ttgcagaatatgcagaaagtaaagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggt |
200 |
Q |
| |
|
|| |||||||||||||| || |||||| ||||||| |||||||||||| |||||| ||||||||||||||| || ||||||||||||||| |||| |
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|
| T |
1058706 |
tttcagaatatgcagaatgtgtagactctaatcccagagaattgggactttatatggctaatgccctcaataaatatggtattctttactgtcatgtggt |
1058805 |
T |
|
| Q |
201 |
ggaaccaagaat |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1058806 |
ggaaccaagaat |
1058817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 1053341 - 1053552
Alignment:
| Q |
1 |
ggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcacctt |
100 |
Q |
| |
|
|||||| |||| || ||||||||| ||||| | ||||| |||||||||| |||| ||||||||||| ||||| | ||||||||| | | ||||||||| |
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|
| T |
1053341 |
ggtggaacccttgaaaatcgttgtagatttgttttggaaattgttgaagctgttgcaaatgagataggtgcagaaagagttggaataaaattatcacctt |
1053440 |
T |
|
| Q |
101 |
ttgcagaatatgcagaaagtaaagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggt |
200 |
Q |
| |
|
||| | ||| || ||| || |||||| |||||| | |||||||||||| ||||||| |||||||||||||| || ||||||||| ||||| ||||| |
|
|
| T |
1053441 |
ttgaaaaatttggagattgtggagactcaaatccccaagaattgggactttatatggtgaatgccctcaataaatatggtattctttattgtcatatggt |
1053540 |
T |
|
| Q |
201 |
ggaaccaagaat |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1053541 |
ggaaccaagaat |
1053552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 173
Target Start/End: Original strand, 1046700 - 1046838
Alignment:
| Q |
35 |
tggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcaccttttgcagaatatgcagaaagtaaagactccaatcc |
134 |
Q |
| |
|
||||| |||||||||| ||||| |||||||| || || || | ||||||||| | ||||||||||||| |||| | | |||| || |||||| ||||| |
|
|
| T |
1046700 |
tggaaattgttgaagctgttgtaaatgagattggtgccgaaagagttggaataaaactatcacctttttcagatttcgaagaatgtggagactcaaatcc |
1046799 |
T |
|
| Q |
135 |
caatgaattgggacttcatatggttaatgccctcaataa |
173 |
Q |
| |
|
|| | |||||| ||| | |||||||||||||||||||| |
|
|
| T |
1046800 |
gaaggcattggggctttacatggttaatgccctcaataa |
1046838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 44171317 - 44171262
Alignment:
| Q |
35 |
tggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattaga |
90 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44171317 |
tggaagttgttgaagctgttgtgaatgagataggagcagaaaaagttggaattaga |
44171262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 44191613 - 44191558
Alignment:
| Q |
35 |
tggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattaga |
90 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44191613 |
tggaagttgttgaagctgttgtgaatgagataggagcagaaaaagttggaattaga |
44191558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 54102925 - 54102841
Alignment:
| Q |
16 |
aatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcacctt |
100 |
Q |
| |
|
||||||||||| || ||||| || ||||| |||||||||| ||||||| ||||| || |||||||| ||||||| ||||||| |
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|
| T |
54102925 |
aatcgttgtcgcttccctctagaggttgtgaaagcagttgttgatgagattggagctgacaaagttggtgttagactttcacctt |
54102841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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