View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3723_low_1 (Length: 692)
Name: NF3723_low_1
Description: NF3723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3723_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Original strand, 580751 - 581218
Alignment:
| Q |
19 |
cacaaaacattataattaagtccccatgccatgcttcggctaaaatcaatttatatgagagccaacactttgtaagttatatgtcagatttccatgctgc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580751 |
cacaaaacattataattaagtccccatgccatgcttcagctaaaatcaatttatatgagagccaacactttgtaagttatatgtcagatttccatgctgc |
580850 |
T |
|
| Q |
119 |
tgcacttcttggtgaattcagtcactcaaaatctatcaaattcgaatcatcaaaggtaagtatattattctttagtgtttttaacaatgaatgtcatgat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580851 |
tgcacttcttggtgaattcagtcactcaaaatctatcaaattcgagtcatcaaaggtaagtatattattctttagtgtttttaacaatgaatgtcatgat |
580950 |
T |
|
| Q |
219 |
cttgaagtaatttatttttataataatgtagcacaagtaggataaatatttatgagtttaatccttttgttataatataaatcagtttcgttgcgtcatc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
580951 |
cttgaagtaatttatttttataataatgtatcacaagtaggataaatatttatgagtttaatccttttgttgtaatataaatcagtttcgttgtgtcatc |
581050 |
T |
|
| Q |
319 |
cattccaggttctggatctgaaaaagatgctaccaaaaaagctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattct |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
581051 |
cattccaggttctggatctgaaaaagatgctaccaaaaaagctatgtgtatttccaatgttgacccatttggaggttggcttcgttagtgttgatattct |
581150 |
T |
|
| Q |
419 |
cttaaccttgcttcaaaaggcaccggttctcgagacacttgttctcaaggttcgtaattaattatatt |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
581151 |
cttaaccttgcttcaaaaggcaccggttctcgagacacttgttctcaaggttcgtaattacttatatt |
581218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 479 - 671
Target Start/End: Original strand, 581268 - 581472
Alignment:
| Q |
479 |
attatattcataatacaagcttcatatcgtataaaagtc-------------gtttgtgacttcttactggtaatttgtttgctttgtaagagtcttatt |
565 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
581268 |
attatattcataatacaagcttcatttcgtataaaagtcttagtaaggtcctgtttgtgacttcttactggtaatttgtttgctttgtaagagtcttatt |
581367 |
T |
|
| Q |
566 |
tggtatttctttttattattaatggttaggaaatatgtgattttggggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgt |
665 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
581368 |
tggtatttctttt-attattaatggttaggaaatatgtgattttggggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgt |
581466 |
T |
|
| Q |
666 |
tgtgaa |
671 |
Q |
| |
|
|||||| |
|
|
| T |
581467 |
tgtgaa |
581472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 344 - 478
Target Start/End: Original strand, 1207516 - 1207650
Alignment:
| Q |
344 |
gatgctaccaaaaaagctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccg |
443 |
Q |
| |
|
||||| ||||||| |||| || |||||||||||||||||| ||||||||||||| || |||||||| || ||||||||| | || ||||||||| |||| |
|
|
| T |
1207516 |
gatgcaaccaaaagagctgtgcgtatttccaatgttgaccgatttggaggttggcttagttagtgtcgaaattctcttagcattacttcaaaagacacct |
1207615 |
T |
|
| Q |
444 |
gttctcgagacacttgttctcaaggttcgtaatta |
478 |
Q |
| |
|
|||||| ||||||| ||||| |||||| ||||||| |
|
|
| T |
1207616 |
gttctcaagacactcgttcttaaggtttgtaatta |
1207650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 360 - 478
Target Start/End: Original strand, 1201351 - 1201469
Alignment:
| Q |
360 |
ctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacacttg |
459 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||||||| || |||||||||||| |||||| ||| || |||||| ||||||||||| ||||||| | |
|
|
| T |
1201351 |
ctatgtgtattttcaacgttgacacatttggaggttggcttgattagtgttgataatctcttggtcttactacaaaagacaccggttctcaagacactag |
1201450 |
T |
|
| Q |
460 |
ttctcaaggttcgtaatta |
478 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1201451 |
ttctcaaggttcgtaatta |
1201469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 361 - 457
Target Start/End: Original strand, 1214741 - 1214837
Alignment:
| Q |
361 |
tatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacact |
457 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||| || |||||||||||||||| ||| |||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
1214741 |
tatgtgtatttccaatgttggcccatttggatgttggcttacttagtgttgatattctgttagccttgcttgaaaagacaccggttctcaagacact |
1214837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 517
Target Start/End: Original strand, 1214868 - 1214906
Alignment:
| Q |
479 |
attatattcataatacaagcttcatatcgtataaaagtc |
517 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
1214868 |
attatattcatgatacaagcttcatatcatataaaagtc |
1214906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 607 - 671
Target Start/End: Original strand, 1207768 - 1207832
Alignment:
| Q |
607 |
tttggggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaa |
671 |
Q |
| |
|
|||| |||||||||||||| |||| ||| ||| ||| | ||||||||| ||||||||||||||| |
|
|
| T |
1207768 |
tttgaggaagagcttttgaattcttctgttgttcccgaatgtttggcttctctccatgttgtgaa |
1207832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 1214321 - 1214381
Alignment:
| Q |
19 |
cacaaaacattataattaagtccccatgccatgcttcggctaaaatcaatttatatgagag |
79 |
Q |
| |
|
||||| ||||| |||| | |||||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
1214321 |
cacaacacattttaatgacgtccccatgccatgcttctactaaaatcattttacatgagag |
1214381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 8188851 - 8188730
Alignment:
| Q |
357 |
aagctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacac |
456 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||| ||| |||||||||||||| | ||||||||| |||||| |
|
|
| T |
8188851 |
aagctatgtgtatttccaatgttgaccgatttggaggttggtttagttagtgttaatattctgttagccttgcttcaaaagacgccggttctcaagacac |
8188752 |
T |
|
| Q |
457 |
ttgttctcaaggttcgtaatta |
478 |
Q |
| |
|
| ||||| |||||| ||||||| |
|
|
| T |
8188751 |
tagttcttaaggttggtaatta |
8188730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 607 - 671
Target Start/End: Complemental strand, 8188591 - 8188527
Alignment:
| Q |
607 |
tttggggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaa |
671 |
Q |
| |
|
|||| |||||||||| |||||||||||| ||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
8188591 |
tttgtggaagagcttctgagttctgctgttgtgcccgattgtttggcttctctccatgttgtgaa |
8188527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 8188904 - 8188864
Alignment:
| Q |
292 |
aatataaatcagtttcgttgcgtcatccattccaggttctg |
332 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||||||||| |
|
|
| T |
8188904 |
aatataaatcagtttcgttgtgccattcattccaggttctg |
8188864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University