View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3724_high_3 (Length: 240)
Name: NF3724_high_3
Description: NF3724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3724_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 3432476 - 3432257
Alignment:
| Q |
18 |
agtgtataggtataagaaagaagcttgcagaacaatgtttacacctgcttcattacactgtctttcttttatatcgcagaatgaggactaaatccaagtt |
117 |
Q |
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| T |
3432476 |
agtgtataggtataagaaaga-gcatgcagaacaatgtttacacctgcttcattacact--ctttcttttatatcggagaatgaggaccaaatccaagtt |
3432380 |
T |
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| Q |
118 |
gttatgatctacacaaggtcctcttagagacaagctttctgtcacaacataaatctaagtcacacaaggatcctcggacaatatcctcgacagggcacta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3432379 |
gttatgatctacacaaggtcctcttagagacaagctttctgtcacaacataaatctaagtcacacaaggatcctcggacaatatcctcaacagggcacta |
3432280 |
T |
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| Q |
218 |
ccacagatcactgggaacatttt |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
3432279 |
ccacagatcactgggaacatttt |
3432257 |
T |
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