View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3724_low_1 (Length: 567)
Name: NF3724_low_1
Description: NF3724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3724_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 3432258 - 3431702
Alignment:
| Q |
1 |
tttgatttatcgtaggattcaccaacatgcttgccttctgaggatcttcaagacggggactcctctcttgtctatgggctgattttgagagagtcaacat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432258 |
tttgatttatcgtaggattcaccaacatgcttgccttctgaggatcttcaagatgaggactcctctcttgtctatgggctgattttgagagagtcaacat |
3432159 |
T |
|
| Q |
101 |
cgctttatgtcattattatagtttttaaatgttttgaggtgtataaaaaagatttggacatattttaatgtcacacttttgcacttatgtgtctatatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3432158 |
cgctttatgtcattattatagtttttaaatgttttgaggtgtataaaaaagatttggacatattttaatgtcacacttttgcactt--gtgtctatatat |
3432061 |
T |
|
| Q |
201 |
ctcacgactatcaaaggatcttcacccgactatcaaaggagaaaggatcttctctatttttt-aaaataaatggaaatgtctt-ggttaaagagaaatac |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
3432060 |
ctcacgactatcaaaggatcttcacccgactatcaaaggagaaaggatcttctctatttttttaaaataaatggaaatgtctttggttaaagagaaatac |
3431961 |
T |
|
| Q |
299 |
atacgaatttgaaaaaattttaattaaagatggcggcatccatttttcacgttttatgtctatatatctccaaataaatcatttcatttctttcaaaaaa |
398 |
Q |
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| T |
3431960 |
acacgaatttgaaaaaaaattaattaaagatggcggcatccatttttcacgttttatgtctatatatctccaaatgaatcatttcattactttcgaaaaa |
3431861 |
T |
|
| Q |
399 |
ttatatctccaaatgaatcatttcatttctttcgaaaaatggagaggattccaacttggccatcacgataactccccctttgctagtgatggtcgttgtt |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
3431860 |
ttatatctccaaatgaatcatttcatttctttcgaaaaatggagaggattccaacttggccatcacgataacttcccctttgctagcgatggtcgttgtt |
3431761 |
T |
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| Q |
499 |
gacttgttgtggatccacctccaatccatcttgccagtttgtcgtggccatgccctatg |
557 |
Q |
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| T |
3431760 |
gacttgttgtggatccacctccaatccatcttgccagtttgttgtggccatgccctatg |
3431702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 41377960 - 41377919
Alignment:
| Q |
112 |
attattatagtttttaaatgttttgaggtgtataaaaaagat |
153 |
Q |
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| T |
41377960 |
attactatagtttttaaatgttgtgaggtgtataaaaaagat |
41377919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 36973835 - 36973882
Alignment:
| Q |
112 |
attattatagtttttaaatgttttgaggtgtataaaaaagatttggac |
159 |
Q |
| |
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|||| ||||||||||||||| |||| |||||||| ||||||||||||| |
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| T |
36973835 |
attactatagtttttaaatgatttgtggtgtatataaaagatttggac |
36973882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 44414957 - 44415004
Alignment:
| Q |
111 |
cattattatagtttttaaatgttttgaggtgtataaaaaagatttggac |
159 |
Q |
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| T |
44414957 |
cattactaaagtttttaaatgttttggggtgtat-aaaaagatttggac |
44415004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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