View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3724_low_2 (Length: 386)
Name: NF3724_low_2
Description: NF3724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3724_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 34579648 - 34580008
Alignment:
| Q |
19 |
aatgatacctgtatctcggattaaactttcattgatatcacaaccaaaatggttccagctattccatctgatcatcatatgtataattgattatcatttg |
118 |
Q |
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| T |
34579648 |
aatgatacctgtgtcttggattaaactttcattgatatcacaaccaaaatggttccagctattccatctgatcatcatatgtataattgattatcatttg |
34579747 |
T |
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| Q |
119 |
agaaagaaaattaatgtattgtttaaaaagtacaaaaaattaaagttatatctcacatataaataaagcatataattcaaattttaataatttttctttt |
218 |
Q |
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| T |
34579748 |
aaaaagaaaactaatgtattgtttaaaaagtacaaaaaatgaaagttatatctcacatataaataaagcatataattcaaattttaataatttttctttt |
34579847 |
T |
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| Q |
219 |
atcaagtagtatatatctcctttcaacaaaaaagaaaagtatatatctcttcactatggataattccatcattctccttaataaaaaaccaatttcatca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34579848 |
atcaagtagtatatatctcctttcaacaaaaaagaaaagtatatatctcttcactatggataattccatcattctccttaataaaaaaccaatttcatca |
34579947 |
T |
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| Q |
319 |
ttcggtcaagatgttcacaaaagcaaaatgggataccacatcttatcttatagtattatct |
379 |
Q |
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| T |
34579948 |
ttcggtcaagatgttcacaaaagcaaaatgggataccacatcttatcttatagtactatct |
34580008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 35124837 - 35124925
Alignment:
| Q |
23 |
atacctgtatctcggattaaactttcattgatatcacaaccaaaatggttccagctattccatctgatcatcatatgtataattgatta |
111 |
Q |
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| T |
35124837 |
atacctgtatctcggattaaactttcattaatatcacaaccgaaatggttccaactattccatctgaacatcatatgtataattgatta |
35124925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 32602384 - 32602472
Alignment:
| Q |
23 |
atacctgtatctcggattaaactttcattgatatcacaaccaaaatggttccagctattccatctgatcatcatatgtataattgatta |
111 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||| |
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| T |
32602384 |
atacctgtatctcggattaaactttcatttatatcacaaccgaaatggttccaactattccatctgaacatcataaatataattgatta |
32602472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 32592241 - 32592330
Alignment:
| Q |
22 |
gatacctgtatctcggattaaactttcattgatatcacaaccaaaatggttccagctattccatctgatcatcatatgtataattgatta |
111 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||| |||||||||||| |
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| T |
32592241 |
gatacctgtatctcggattaaactttcatttatatcacaaccgaaatggttccaactattccatctgaaaatcataaatataattgatta |
32592330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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