View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3724_low_4 (Length: 245)
Name: NF3724_low_4
Description: NF3724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3724_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 7753152 - 7753399
Alignment:
| Q |
1 |
ttcactccgagccaaactccgacacccaacccatctctcctacctttgcctccttttggtccgaaatagaatagagcctcggatacctacttctaaaact |
100 |
Q |
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| T |
7753152 |
ttcactccgagccaaactccgacacccaacccacctctcctaccttagcctccttttggtccgaaatagaatagagcctcagatacctacttctaaaact |
7753251 |
T |
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| Q |
101 |
actatctcctctccat----caccccaaaaactagagttgagaccattaccaactggtcgctccaaccccgaattgaaccaattaagctccccaaaatca |
196 |
Q |
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| T |
7753252 |
actatctcctctccatatgtcaccccaaaaactagagttgagaccattaccaacttgtcgctccaaccccgaattgaaccaattaagctccccaaaatca |
7753351 |
T |
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| Q |
197 |
ccaagcttaattaggtccttccaccaaatagaagcccatctctgctcc |
244 |
Q |
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| T |
7753352 |
ccaagcttaattaggcccttccaccaaatagaagcccatctcggctcc |
7753399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 40386574 - 40386819
Alignment:
| Q |
3 |
cactccgagccaaactccgacacccaacccatctctcctacctttgcctccttttggtccgaaatagaatagagcctcggatacctacttctaaaactac |
102 |
Q |
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| T |
40386574 |
cactccgtgccaaactccgacaccaaacccacctctcccaccttagcctccttttgatccgagatagaataaagcctcatatacaaactcctaaagcttc |
40386673 |
T |
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| Q |
103 |
tatctcctctcca----tcaccccaaaaactagagttgagaccattaccaactggtcgctccaaccccgaattgaaccaattaagctccccaaaatcacc |
198 |
Q |
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| T |
40386674 |
tatctcctctccaattgtcacaccaaaaactagagttgagtccattaccaacttgtcgctccaaccccgaattaaaccaattaagctccccaaaatcacc |
40386773 |
T |
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| Q |
199 |
aagcttaattaggtccttccaccaaatagaagcccatctctgctcc |
244 |
Q |
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| T |
40386774 |
aagcttagttagttccttccaccaaatagaagcccatctcggctcc |
40386819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 230
Target Start/End: Complemental strand, 49456173 - 49455987
Alignment:
| Q |
48 |
gcctccttttggtccgaaatagaatagagcctcggatacctacttctaaaactactatctcctctcca----tcaccccaaaaactagagttgagaccat |
143 |
Q |
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| T |
49456173 |
gcctccatttgggccgagatagaaaaaagcctaggatacttacttcggaagcttctttcccctctccaagtatcactccaaaaactagaattgaggccat |
49456074 |
T |
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| Q |
144 |
taccaactggtcgctccaaccccgaattgaaccaattaagctccccaaaatcaccaagcttaattaggtccttccaccaaatagaag |
230 |
Q |
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| T |
49456073 |
tgcccattttccgctcaagcccggaattaaaccaattaagttcaccaaaatcaccaagcttaattagctccttccacgaaagagaag |
49455987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 17991282 - 17991323
Alignment:
| Q |
165 |
ccgaattgaaccaattaagctccccaaaatcaccaagcttaa |
206 |
Q |
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| T |
17991282 |
ccgaattaaaccaattaagctcaccaaaatcaccaagcttaa |
17991323 |
T |
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