View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3724_low_6 (Length: 239)
Name: NF3724_low_6
Description: NF3724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3724_low_6 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 7752912 - 7753063
Alignment:
| Q |
90 |
cgccgaactcttccacaatctcttgaaaactcctttctcctccaccctccaccccatctc--ctcgctaaggacaataccctccaacctcttataggccg |
187 |
Q |
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| T |
7752912 |
cgccgaactcttccacaacctcttgaaaactcctttctcctccaccctcggctccaccccacctcgctaaggacaataccctccaacctcttataggccg |
7753011 |
T |
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| Q |
188 |
agctcaccataaaaataccggactcatctaacttccacctccatttatcctc |
239 |
Q |
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| T |
7753012 |
agctcaccgtaaaaataccggactcatctaacttccacctccatttatcctc |
7753063 |
T |
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Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 34 - 239
Target Start/End: Original strand, 40386277 - 40386479
Alignment:
| Q |
34 |
ttggttggaactcgattaagaatagctctccaagcaaaagccactacttttgatgtcgccgaactcttccacaatctcttgaaaactcctttctcctcca |
133 |
Q |
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| T |
40386277 |
ttggttggaactcggttaagaatggctctccaagcaaaagccactacctttgaaaacgacggacacttccacaacctcttgaaaactcctttctcctcaa |
40386376 |
T |
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| Q |
134 |
ccctccaccccatctcctcgctaaggacaataccctccaacctcttataggccgagctcaccataaaaataccggactcatctaacttccacctccattt |
233 |
Q |
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| T |
40386377 |
ccctccatcccacctcat---taaggatactaccttccaacctcttataggccgagctcaccgaaaaaattccggaatcttccaacttccacctccattt |
40386473 |
T |
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| Q |
234 |
atcctc |
239 |
Q |
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| T |
40386474 |
gtcctc |
40386479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 52075227 - 52075161
Alignment:
| Q |
165 |
accctccaacctcttataggccgagctcaccataaaaataccggactcatctaacttccacctccat |
231 |
Q |
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| T |
52075227 |
acccaccaacctcttataggccgaactcaccgaaaaaataccggaatcttctagcttccacttccat |
52075161 |
T |
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