View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3724_low_7 (Length: 239)
Name: NF3724_low_7
Description: NF3724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3724_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 32943646 - 32943516
Alignment:
| Q |
12 |
gagatgaaggtagaagatggtgacaaaataatctagtgttgagggtatatagttctctacttgatctaatagctaacattaactttcctatgatagaaaa |
111 |
Q |
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| T |
32943646 |
gagatgaaggtggaagatggttacaaaataatctagtgttgagggtgtatagttctctacctgatctaatggctaacattaactttcccatggtgggaaa |
32943547 |
T |
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| Q |
112 |
caaacatccttttccatgctaaatcccacct |
142 |
Q |
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| T |
32943546 |
caaatatcctttcccatgctaaatcccacct |
32943516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 32944429 - 32944532
Alignment:
| Q |
38 |
aataatctagtgttgagggtatatagttctctacttgatctaatagctaacattaactttcctatgatagaaaacaaacatccttttccatgctaaatcc |
137 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| | ||| | | |||||| ||| ||| |||||||||| || |
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| T |
32944429 |
aataatctagtgttgagggtgtatagttctctacttaatctaatggctaacattaacttttccatggtgggaaacaagtatcatttcccatgctaaaccc |
32944528 |
T |
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| Q |
138 |
cacc |
141 |
Q |
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|||| |
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| T |
32944529 |
cacc |
32944532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 32547832 - 32547710
Alignment:
| Q |
12 |
gagatgaaggtagaagatggtgacaaaataatctagtgttgagggtatatagttctctacttgatctaatagctaacattaactttcctatgatagaaaa |
111 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| | ||||| |
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| T |
32547832 |
gagatgaaggtggaagatgatgacaaaataatctagtgttgagggtctatagttctctatttgatctaatggctaacattaactttcctatggtggaaaa |
32547733 |
T |
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| Q |
112 |
caaacatccttttccatgctaaa |
134 |
Q |
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||| ||||||| |||||||||| |
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| T |
32547732 |
caagaatcctttcccatgctaaa |
32547710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 32548604 - 32548721
Alignment:
| Q |
24 |
gaagatggtgacaaaataatctagtgttgagggtatatagttctctacttgatctaatagctaacattaactttcctatgatagaaaacaaacatccttt |
123 |
Q |
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|||||| ||||||||||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| | | |||||| ||| ||| |
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| T |
32548604 |
gaagatagtgacaaaataatataatgttgagggtgtatagttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagtatcattt |
32548703 |
T |
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| Q |
124 |
tccatgctaaatcccacc |
141 |
Q |
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|||| ||||| |||||| |
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| T |
32548704 |
cccatactaaaccccacc |
32548721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 33370038 - 33369908
Alignment:
| Q |
12 |
gagatgaaggtagaagatggtgacaaaataatctagtgttgagggtatatagttctctacttgatctaatagctaacattaactttcctatgatagaaaa |
111 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||| | | ||| |
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| T |
33370038 |
gagatgaaggtggaagatggttacaaaataatctagtgttgagggtgtatagttctctacctgatctaatggctaacattaactttcccatggtgggaaa |
33369939 |
T |
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| Q |
112 |
caaacatccttttccatgctaaatcccacct |
142 |
Q |
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|||| ||| ||| |||||||||||||||||| |
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| T |
33369938 |
caaatatcatttcccatgctaaatcccacct |
33369908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 53086514 - 53086436
Alignment:
| Q |
142 |
tttctttgatccaatacttgcctatatttttctcatccataaccgacaaatcacaatgcatctctccatgtattacttg |
220 |
Q |
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| T |
53086514 |
tttctttgatccaatacttgcctatatttttctcatccataaccgacaaatcacaatgcatctctccatgtattacttg |
53086436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 143
Target Start/End: Original strand, 33370820 - 33370925
Alignment:
| Q |
38 |
aataatctagtgttgagggtatatagttctctacttgatctaatagctaacattaactttcctatgatagaaaacaaacatccttttccatgctaaatcc |
137 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| ||| | | |||||| ||||||| |||||||||| || |
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| T |
33370820 |
aataatctagtgttgagggtgtataattctctacttgatctaatggctaacattaactttcccatggtgggaaacaagtatcctttcccatgctaaaccc |
33370919 |
T |
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| Q |
138 |
cacctt |
143 |
Q |
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|||||| |
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| T |
33370920 |
cacctt |
33370925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 4608915 - 4608846
Alignment:
| Q |
146 |
tttgatccaatacttgcctatatttttc-tcatccataaccgacaaatcacaatgcatctctccatgtat |
214 |
Q |
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|||||| |||||||||||| |||||||| |||||| |||| | ||||||||||| |||||||||||||| |
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| T |
4608915 |
tttgatacaatacttgcctctatttttcctcatccgtaactcataaatcacaatgtatctctccatgtat |
4608846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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