View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3724_low_8 (Length: 239)
Name: NF3724_low_8
Description: NF3724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3724_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 42312023 - 42311805
Alignment:
| Q |
5 |
cgactatctctgccaccactaaaatccaaatcaaaccaatcactaagagaagcttcaccaccaccatactcacaaatggatggtatagaattttgtcaaa |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
42312023 |
cgactatctctgccaccactaaaatccaaatcaaaccaatcactaagagaagcttcaccaccaccatgctcacaaatggatggcatagaattttgtcaaa |
42311924 |
T |
|
| Q |
105 |
agactgtctaaccgtagcatttccatgcaagtgcatttgcaagtcctttaaatcatgtgtatccttagctattttctatcttt--ttggtcattgttttc |
202 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42311923 |
agactgtctaaccgtagcatttccatgcaagtgcatttgcaagtcctttaaatcatgtgtatccttagctattttctatcttttcttggtcattgttttc |
42311824 |
T |
|
| Q |
203 |
ttgcccttctagattcttt |
221 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
42311823 |
ttgcccttctagattcttt |
42311805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 47247389 - 47247607
Alignment:
| Q |
4 |
ccgactatctctgccaccactaaaatccaaatcaaaccaatcactaagagaagcttcaccaccaccatactcacaaatggatggtatagaattttgtcaa |
103 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
47247389 |
ccgactatctctaccaccactaaaatccaaatcaaacaaatcactaagagaagtttcaccaccaccatgctcacaaatggatggcgtagaattttgtcaa |
47247488 |
T |
|
| Q |
104 |
aagactgtctaaccgtagcatttccatgcaagtgcatttgcaagtcctttaaatcatgtgtatccttagctattttctatcttt--ttggtcattgtttt |
201 |
Q |
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|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47247489 |
aagactggctaaccgtagca-ttccatgcaagtgcatttgcaagtcctttaaatcatgtgtatccttagctattttctatcttttcttggtcattgtttt |
47247587 |
T |
|
| Q |
202 |
cttgcccttctagattcttt |
221 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
47247588 |
cttgcccttctagattcttt |
47247607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 4 - 188
Target Start/End: Complemental strand, 41325906 - 41325723
Alignment:
| Q |
4 |
ccgactatctctgccaccactaaaatccaaatcaaaccaatcactaagagaagcttcaccaccaccatactcacaaatggatggtatagaattttgtcaa |
103 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||||||| | |
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| T |
41325906 |
ccgaccatctctgccaccacaaaaatccaaatcaaaccaatcactaagagaagcttcgccacaaccatgctcacaaatggatggcatagaattttgtcga |
41325807 |
T |
|
| Q |
104 |
aagactgtctaaccgtagcatttccatgcaagtgcatttgcaagtcctttaaatcatgtgtatccttagctattttctatctttt |
188 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41325806 |
aagactgtctaaccgtagca-ttcgatgcaagtgcatttgcaagtactttaaatcatgtgtatccttagctattttctatctttt |
41325723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 20908973 - 20908906
Alignment:
| Q |
4 |
ccgactatctctgccaccactaaaatccaaatcaaaccaatcactaagagaagcttcaccaccaccat |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20908973 |
ccgactatctctgccaccactaaaatccaaatcaaaccaatcactaagagaagcttcaccaccaccat |
20908906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 20923421 - 20923354
Alignment:
| Q |
4 |
ccgactatctctgccaccactaaaatccaaatcaaaccaatcactaagagaagcttcaccaccaccat |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20923421 |
ccgactatctctgccaccactaaaatccaaatcaaaccaatcactaagagaagcttcaccaccaccat |
20923354 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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