View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3725_high_7 (Length: 373)
Name: NF3725_high_7
Description: NF3725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3725_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 6 - 357
Target Start/End: Complemental strand, 42936714 - 42936364
Alignment:
| Q |
6 |
agcagcacagaccactgttgcctttatctttgatcgttacttgacagatcacttaattattttggccaaacagatcacaatttaaaagagtggtaattta |
105 |
Q |
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| T |
42936714 |
agcatcacacaccactgttgcctttatcttcgatcgttacttgacagatcacttaattattttggtcaaacagatcacaatttaaaagagtggtaattta |
42936615 |
T |
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| Q |
106 |
ttttacaggattaaagagcggtaacgtttagtttgacatttcttaatctaaaaaagatttgacatttttctctcttactggtactcgtattttgnnnnnn |
205 |
Q |
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| T |
42936614 |
ttttacaggattaaagagcggtaacgtttagtttgacatttcttaatctaaataagatttgacatttttctctcttactggtactcgtattttg-ttttt |
42936516 |
T |
|
| Q |
206 |
nagcgttgatgcatgtttgaaatcacccagtaacgcnnnnnnngaaggtgtgttgttgtgcattttccaaaaactcaaaagggccaacctgggatagtga |
305 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42936515 |
tagcgttgatgcatgtttgaaatcacccagtaacgcaaaaaaagaaggtgtgttgttgtgcattttccaaaaactcaaaagggccaacctgggatagtga |
42936416 |
T |
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| Q |
306 |
attgtgctcagaagtgcatttaatgcaaaactacagaaagcaatgagatgag |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42936415 |
attgtgctcagaagtgcatttaatgcaaaactacagaaagcaatgagatgag |
42936364 |
T |
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