View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3725_low_1 (Length: 893)
Name: NF3725_low_1
Description: NF3725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3725_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 253 - 534
Target Start/End: Original strand, 48569141 - 48569421
Alignment:
| Q |
253 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttc |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48569141 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctttttggttggaaatgctccaatggcccatatggttgttc |
48569240 |
T |
|
| Q |
353 |
agcctaatgaagaccattcaggatcctcatcttttaaggtatattcatggaaaattatggtactttggtctactcttggaaggttgacatcttct-gaaa |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48569241 |
agcctaatgaagaccattcaggatcctcatcttttaaggtatattcatagaaaattatggtactttggtctactcttggaaggttgacatcttctggaaa |
48569340 |
T |
|
| Q |
452 |
taccttcaaggcatttcctttctttggttgtaccacagcctttccaatacttctgttttctgtgtgaaaattgattatgaatt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48569341 |
taccttcaaggcatttcctttctttggttgtaccacagcctttccaatacttctgttttc--tgtgaaaattgattatgaatt |
48569421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 559 - 877
Target Start/End: Original strand, 48569420 - 48569731
Alignment:
| Q |
559 |
ttcctttgctgaaatcttccgatagaaattcttcgtcatgatcaagtcccaagtaattgctaaaaacaagtttgactttagaaaatgcgaggattttgtt |
658 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48569420 |
ttcctttgctgaaatcttccgatataaattcttcttca------agtcccaagtaattgctaaaaacaagtttgactttagaaaatgcgaggattttgtt |
48569513 |
T |
|
| Q |
659 |
tgggtgacagaggatgaattgatggagtattttcccgagcaggcagacttttttaacaaaattatcattagctgatgacggctgtttagttaaatgtatt |
758 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
48569514 |
tgggtgacaaaggatgaattgatggagtattttcccgagcaggcagacttttttaacaaaattatcattggctgatgacggctgtttggttaaatgtatt |
48569613 |
T |
|
| Q |
759 |
tcaaatgagtttatttaattacatcaagaacatgaatgcaggtttatgagctcaacaatatgnnnnnnnattaaacgcaaattctggaggcttgtatatg |
858 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48569614 |
tcaaatgagtttatttaattacatcaagaacatgaatgcaggtttatgagctcaacaaaatg-ttttttattaaacgcaaattctggaggcttgtatatg |
48569712 |
T |
|
| Q |
859 |
atttagtggatgttggaag |
877 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
48569713 |
atttagtggatgttggaag |
48569731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 48568936 - 48569090
Alignment:
| Q |
42 |
ttctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttc |
139 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48568936 |
ttctttaggtcactgcaaagagctcttgacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttc |
48569035 |
T |
|
| Q |
140 |
cagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattcattgtgg |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48569036 |
cagagaaaccttatgaatcagaggaaaccatgcgtaaggtgaacattcattgtgg |
48569090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 541 - 737
Target Start/End: Complemental strand, 10821612 - 10821422
Alignment:
| Q |
541 |
attatacttgctcattttttcctttgctgaaatcttccgatagaaattcttcgtcatgatcaagtcccaagtaattgctaaaaacaagtttgactttaga |
640 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| | ||||||||||| ||| | || ||||||||||||||||||||||| ||| || | |
|
|
| T |
10821612 |
attatacttgctcattctttcctttgcttaaatcttctgtcagaaattcttcttca------aatcacaagtaattgctaaaaacaagttcgacattggc |
10821519 |
T |
|
| Q |
641 |
aaatgcgaggattttgtttgggtgacagaggatgaattgatggagtattttcccgagcaggcagacttttttaacaaaattatcattagctgatgac |
737 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||| ||||||||||| ||||| || || ||||| |||||||| |||||||||||||||| |
|
|
| T |
10821518 |
aaatgcgaggactttgtttgggtgactaaggatgaattgattgagtattttccagagcaagctgagtttttaaacaaaatgatcattagctgatgac |
10821422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 259 - 445
Target Start/End: Complemental strand, 10821937 - 10821749
Alignment:
| Q |
259 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagccta |
358 |
Q |
| |
|
||||||||||| || ||||| |||||||||||| |||||||||| || ||||| |||||||| ||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
10821937 |
ttgcagtgtgcagaatctgccttgaaatcagtcttaggagatctttcgaatacatattttgtcggaaatgctccgatggcccatacggttgttcagccta |
10821838 |
T |
|
| Q |
359 |
atgaagaccattcaggatcctcatcttttaaggtatattcatggaaaa--ttatggtactttggtctactcttggaaggttgacatctt |
445 |
Q |
| |
|
| ||||| || ||||||| ||||||||||||||| || | | ||| || |||||||| |||||| |||||||||||||||||| |
|
|
| T |
10821837 |
aagaagagcagacaggatcaacatcttttaaggtatgtttaaaggaaattttgtggtacttcaatctactattggaaggttgacatctt |
10821749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 608 - 737
Target Start/End: Original strand, 36145837 - 36145966
Alignment:
| Q |
608 |
caagtaattgctaaaaacaagtttgactttagaaaatgcgaggattttgtttgggtgacagaggatgaattgatggagtattttcccgagcaggcagact |
707 |
Q |
| |
|
||||||||||||||||||||||| ||| || | ||| | ||||| |||||||||||||| ||||||||||||||||||||||||| ||||| || || | |
|
|
| T |
36145837 |
caagtaattgctaaaaacaagttcgacattggcaaaggtgaggactttgtttgggtgactaaggatgaattgatggagtattttcctgagcaagctgagt |
36145936 |
T |
|
| Q |
708 |
tttttaacaaaattatcattagctgatgac |
737 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |
|
|
| T |
36145937 |
ttttaaacaaaatgatcattagctgatgac |
36145966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 259 - 394
Target Start/End: Original strand, 36145449 - 36145584
Alignment:
| Q |
259 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagccta |
358 |
Q |
| |
|
||||||||||| || ||||| |||||||||||| | |||||||| || ||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
36145449 |
ttgcagtgtgcagaatctgccttgaaatcagtcttgggagatctttcaaatacatattttgtcggaaatgctccgatggcccatattgttgttcagccta |
36145548 |
T |
|
| Q |
359 |
atgaagaccattcaggatcctcatcttttaaggtat |
394 |
Q |
| |
|
| ||||| || ||||||| ||||||||||||||| |
|
|
| T |
36145549 |
aagaagagcagacaggatcaacatcttttaaggtat |
36145584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 10822347 - 10822202
Alignment:
| Q |
44 |
ctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttcca |
141 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||||||| ||||||||||||| ||| ||| | ||||||||||| || || || |||||||||||||||||| |
|
|
| T |
10822347 |
ctttaggtcactacaaagggctcttgacagaagactttaccttcttctctttggtgatgcttatggggctccaagtggaaagcctgtgtggcattttcca |
10822248 |
T |
|
| Q |
142 |
gagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
187 |
Q |
| |
|
|| ||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
10822247 |
gaaaaagtatatgaatcagaggaaactatgcgtaaggtgaacattc |
10822202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 43 - 187
Target Start/End: Original strand, 36145048 - 36145194
Alignment:
| Q |
43 |
tctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttcc |
140 |
Q |
| |
|
||||||||||||| ||||| |||| || |||||||| ||||||||||||| ||| ||| | ||||||||||| || || || ||||||||||||||||| |
|
|
| T |
36145048 |
tctttaggtcactacaaagggctcttgatagaagactttaccttcttctctttggtgatgcttatggggctccaagtggaaagcctgtgtggcattttcc |
36145147 |
T |
|
| Q |
141 |
agagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
187 |
Q |
| |
|
||| ||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
36145148 |
agaaaaagtatatgaatcagaggataccatgcgtaaggtgaacattc |
36145194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University