View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3725_low_12 (Length: 276)
Name: NF3725_low_12
Description: NF3725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3725_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 3457821 - 3457587
Alignment:
| Q |
6 |
atatgacacatgaaagacaactactaaaataagataaagcaaaacaatataaaatttgtccaatttcatannnnnnnnnnn-ataatgtgtccaatttca |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3457821 |
atatgacacatgaaagacaactactaaaataagataaagcaaaacaatataaaatttgtccaatttcatatatattttttttataatgtgtccaatttca |
3457722 |
T |
|
| Q |
105 |
tttttctaacatatttgacctcttaatgcacatggttgcttgggtttctgttgtattaaattttgtgtttttataaagtttgttcctttacatcacaagt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3457721 |
tttttctaacatatttgacctcttaatgcacatggttgcttgggtttctgttgtattaaattttgtgtttttataaagtttgttcctttacatcacaagt |
3457622 |
T |
|
| Q |
205 |
ttactttacaatcatatgcatatgtatatgctatt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
3457621 |
ttactttacaatcatatgcatatgtatatgctatt |
3457587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University