View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3725_low_13 (Length: 271)
Name: NF3725_low_13
Description: NF3725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3725_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 35141887 - 35142141
Alignment:
| Q |
1 |
ggtatccaatgattagtttatagaacatgtttacagaataacagtattagtagtgtctcacaacatatacttcacaaactgattatttaaattattgata |
100 |
Q |
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| T |
35141887 |
ggtatccaatgattagtttctagaacatgtttacagaataacagtattagtagtgtctcacaacatatacttcacaaactgattatttaaattattgata |
35141986 |
T |
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| Q |
101 |
catatgagagaactttgatcagagcagctacttgttctgctacctttcttcaaataaagttacaaatggttcaattggagatgtttagacaaacttttcc |
200 |
Q |
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| T |
35141987 |
catatcagagaactttgatcagagcagctacttgttctgctacctttcttcaaataaagttacaaatggttcaattggagatgtttagacaaacttttcc |
35142086 |
T |
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| Q |
201 |
tgtggaaagtacaaagtgatccaagtacacgcttcagtttgagtgaagtaaaata |
255 |
Q |
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| T |
35142087 |
tgtggaaagtacaaagtgatccaagtacacgcttcagtttgagtgaagtaaaata |
35142141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 37165847 - 37165772
Alignment:
| Q |
134 |
gttctgctacctttcttcaaataaagttacaaatggttcaattggagatgtttagacaaacttttcctgtggaaagt |
210 |
Q |
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| T |
37165847 |
gttctgctacccttcttcaac-aaagttgcacatggtgctattggagatgcttaaacaaacttttcctgtggaaagt |
37165772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 37133300 - 37133235
Alignment:
| Q |
190 |
caaacttttcctgtggaaagtacaaagtgatccaagtacacgcttcagtttgagtgaagtaaaata |
255 |
Q |
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| T |
37133300 |
caaacttttcctgtggaaagtacaaaacaatcataggacatgcttgagtttgagtgaaataaaata |
37133235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 37140488 - 37140451
Alignment:
| Q |
178 |
gagatgtttagacaaacttttcctgtggaaagtacaaa |
215 |
Q |
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| T |
37140488 |
gagatgcttaaacaaacttttcctgtggaaagtacaaa |
37140451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 37140216 - 37140172
Alignment:
| Q |
171 |
tcaattggagatgtttagacaaacttttcctgtggaaagtacaaa |
215 |
Q |
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| T |
37140216 |
tcaattggagatgcttaatcaaacttttccagtggaaagtacaaa |
37140172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 3021956 - 3022050
Alignment:
| Q |
126 |
agctacttgttctgctacctttcttcaaataaagttacaaatggttcaattggagatgtttagacaaacttttcctgtggaaagtacaaagtgatc |
221 |
Q |
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| T |
3021956 |
agctacatgttctcttacccttcttcaac-aaagttgcaaatagttctactggagatgcttagacaaacttttcctgtggaatgtacaaagtgatc |
3022050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 3021851 - 3021919
Alignment:
| Q |
37 |
aataacagtattagtagtgtctcacaacata-tacttcacaaactgattatttaaattattgatacata |
104 |
Q |
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| T |
3021851 |
aataacagtattaatagtgtctcacaatataatgtttcacaaattcattatttaaattattgatacata |
3021919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 29722975 - 29723066
Alignment:
| Q |
116 |
tgatcagagcagctacttgttctgctacctttcttcaaataaagttacaaatggttcaattggagatgtttagacaaacttttcctgtggaaagt |
210 |
Q |
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| T |
29722975 |
tgatcagagaagct--ttgttctgctacctttcttcaac-aaagttgcacatggtgccattggagatgcttaaacaaacttttcctatgaaaagt |
29723066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 29722904 - 29722957
Alignment:
| Q |
65 |
atatacttcacaaactgattatttaaattattgatacatatgagagaactttga |
118 |
Q |
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| T |
29722904 |
atatgcttcacaaattgatattttaaattattgatacataacagagaactttga |
29722957 |
T |
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