View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3725_low_14 (Length: 265)
Name: NF3725_low_14
Description: NF3725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3725_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 36407456 - 36407705
Alignment:
| Q |
1 |
gaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaattggaagag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36407456 |
gaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaattggaagag |
36407555 |
T |
|
| Q |
101 |
actccccaaatttaattggacatgtaagttacatataataaaaagagtagccttaaaattggccaacaatctaatgatgcatgacatgacatatttattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36407556 |
actccccaaatttaattggacatgtaagttacatataataaaaagagtagccttaaaattggccaacaatctaatgatgcatgacatgacatatttattt |
36407655 |
T |
|
| Q |
201 |
aaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaag |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36407656 |
aaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaag |
36407705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 36412579 - 36412828
Alignment:
| Q |
1 |
gaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaattggaagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36412579 |
gaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaattggaagag |
36412678 |
T |
|
| Q |
101 |
actccccaaatttaattggacatgtaagttacatataataaaaagagtagccttaaaattggccaacaatctaatgatgcatgacatgacatatttattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36412679 |
actccccaaatttaattggacatgtaagttacatataataaaaagagtagccttaaaattggccaacaatctaatgatgcatgacatgacatatttattt |
36412778 |
T |
|
| Q |
201 |
aaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaag |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36412779 |
aaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaag |
36412828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 36400001 - 36400245
Alignment:
| Q |
1 |
gaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaattggaagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36400001 |
gaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaattggaagag |
36400100 |
T |
|
| Q |
101 |
actccccaaatttaattggacatgtaagttacatataataaaaagagtagccttaaaattggccaacaatctaatgatgcatgacatgacatatttattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||||| || |||| || | ||||| |
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| T |
36400101 |
actccccaaatttaattggacatgtaagttaaatatattaaaaagagtagccttaaaacaggcctacaatctaatgatatataacat---atgtatattt |
36400197 |
T |
|
| Q |
201 |
aaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaag |
250 |
Q |
| |
|
||||| | |||||||||||||||||||||| |||||||||||||||| |
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|
| T |
36400198 |
aaaaa--ctcttgtgcatttataggtgtggactgtatggacagaagaaag |
36400245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 36419642 - 36419881
Alignment:
| Q |
2 |
aaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaattggaagaga |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
36419642 |
aaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgagacaggaagaga |
36419741 |
T |
|
| Q |
102 |
ctccccaaatttaattggacatgtaagttacatataataaaaagagtagccttaaaattggccaacaatctaatgatgcatgacatgacatatttattta |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| | ||| ||||| |||||| ||| || ||||||| |
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|
| T |
36419742 |
ctccccaaatttaattggacatgtaagttatatataataaaaagagtggccttaaaattggccgataatttaatggtgcatg--atg---tacttattta |
36419836 |
T |
|
| Q |
202 |
aaaattgtgttgtgcatttataggtgtggacactatggacagaag |
246 |
Q |
| |
|
| ||| |||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
36419837 |
atcattatgttatgcatttgtaggtgtggacactatggacagaag |
36419881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 36429604 - 36429734
Alignment:
| Q |
1 |
gaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaattggaagag |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||| | ||||||||||||||||||| ||||||| |
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|
| T |
36429604 |
gaaggacgatattcaacgaaatctgatgtcttcagttatggggtcatactactggagactattgctggccaaagaaacacacattgtgaaaaaggaagag |
36429703 |
T |
|
| Q |
101 |
actccccaaatttaattggacatgtaagtta |
131 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |
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|
| T |
36429704 |
aatccccaaatttaattggacatgtaagtta |
36429734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 36436066 - 36436196
Alignment:
| Q |
1 |
gaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaattggaagag |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| ||| || |||||||||||||||||||||||| | ||||||||||||||||||| ||||||| |
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|
| T |
36436066 |
gaaggacgatattcaactaaatcggatgtcttcagttttggtgttttactactggagattattgctggccaaagaaacacacattgtgaaacaggaagag |
36436165 |
T |
|
| Q |
101 |
actccccaaatttaattggacatgtaagtta |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36436166 |
actccccaaatttaattggacatgtaagtta |
36436196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 36370803 - 36370933
Alignment:
| Q |
1 |
gaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaattggaagag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| | ||||||||| ||||||||| ||||||| |
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|
| T |
36370803 |
gaaggacgatattcaacaaaatctgatgtcttcagttatggtgtcatactactagagattattgctggccaaagaaacacatattgtgaaacaggaagag |
36370902 |
T |
|
| Q |
101 |
actccccaaatttaattggacatgtaagtta |
131 |
Q |
| |
|
| || |||||||||||||||||||||||||| |
|
|
| T |
36370903 |
aatcaccaaatttaattggacatgtaagtta |
36370933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 36376568 - 36376698
Alignment:
| Q |
1 |
gaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaattggaagag |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| ||| || |||||||||||||||||||| ||| | ||||||||||||||||||| ||||||| |
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|
| T |
36376568 |
gaaggacgatattcaactaaatcggatgtcttcagttttggtgttttactactggagattattgccggccaaagaaacacacattgtgaaacaggaagag |
36376667 |
T |
|
| Q |
101 |
actccccaaatttaattggacatgtaagtta |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36376668 |
actccccaaatttaattggacatgtaagtta |
36376698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 36401295 - 36401425
Alignment:
| Q |
1 |
gaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaattggaagag |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||| | ||||||||||||||||||| ||||||| |
|
|
| T |
36401295 |
gaaggacgatattcaacgaaatctgatgtctttagttatggggtcttactgctagagattattgctggtcaaagaaacacacattgtgaaacaggaagag |
36401394 |
T |
|
| Q |
101 |
actccccaaatttaattggacatgtaagtta |
131 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36401395 |
cttccccaaatttaattggacatgtaagtta |
36401425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 36389804 - 36389933
Alignment:
| Q |
1 |
gaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaattggaagag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| | ||||||||||||| ||||| ||||||| |
|
|
| T |
36389804 |
gaaggacgatattcaacaaaatctgatgtcttcagttatggtgtcatactactagagattattgctggccaaagaaacacacattctgaaacaggaagag |
36389903 |
T |
|
| Q |
101 |
actccccaaatttaattggacatgtaagtt |
130 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
36389904 |
catccctgaatttaattggacatgtaagtt |
36389933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 36376753 - 36376807
Alignment:
| Q |
192 |
tatttatttaaaaattgtgttgtgcatttataggtgtggacactatggacagaag |
246 |
Q |
| |
|
|||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
36376753 |
tatttatttaaagattgtgttgtacatttgtaggtgtggacactatggacagaag |
36376807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 36436263 - 36436317
Alignment:
| Q |
192 |
tatttatttaaaaattgtgttgtgcatttataggtgtggacactatggacagaag |
246 |
Q |
| |
|
|||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
36436263 |
tatttatttaaagattgtgttgtacatttgtaggtgtggacactatggacagaag |
36436317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 36390004 - 36390052
Alignment:
| Q |
198 |
tttaaaaattgtgttgtgcatttataggtgtggacactatggacagaag |
246 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
36390004 |
tttaaagattgtgttgtacatttgtaggtgtggacactatggacagaag |
36390052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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