View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3725_low_18 (Length: 224)
Name: NF3725_low_18
Description: NF3725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3725_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 48588827 - 48589017
Alignment:
| Q |
20 |
gtttggtatcttcaattccatttttggctttgttgaccttatatacatccattagtcccttgccaaaatcaccttccttctcctacaaattgaattgaat |
119 |
Q |
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| T |
48588827 |
gtttggtatcttcaattccatttttggctttgttgaccttatacacatccattagtcccttgccaaaatcaccttccttctcctacaaattgaattgaat |
48588926 |
T |
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| Q |
120 |
tattattctgtaatcagaacataatacgtatagttaaatcatcaaaattaaacaatcatgtattaactaacttgatgaatcggtttcttct |
210 |
Q |
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| T |
48588927 |
tattactctgtaatcagaacataatacgtatagttaaatcatcaaaattaaacaatcatgtattaactaacttgatgaatcggtttcttct |
48589017 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 42579234 - 42579161
Alignment:
| Q |
41 |
ttttggctttgttgaccttatatacatccattagtcccttgccaaaatcaccttccttctcctacaaattgaat |
114 |
Q |
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| T |
42579234 |
ttttggccttatttactttatacaaatccattaatcccttgccaaaatcacattccttctccaacaaattgaat |
42579161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 6462179 - 6462230
Alignment:
| Q |
58 |
ttatatacatccattagtcccttgccaaaatcaccttccttctcctacaaat |
109 |
Q |
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| T |
6462179 |
ttatatagatccattaatcccttgccaaaatcacattccttctccaacaaat |
6462230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 39062525 - 39062581
Alignment:
| Q |
58 |
ttatatacatccattagtcccttgccaaaatcaccttccttctcctacaaattgaat |
114 |
Q |
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| T |
39062525 |
ttatatagatccattaatcccttgccaaaatcacattcctttttcaacaaattgaat |
39062581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 17057332 - 17057382
Alignment:
| Q |
121 |
attattctgtaatcagaacataatacgtatagttaaatcatcaaaattaaa |
171 |
Q |
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| T |
17057332 |
attattgtgtaatcagaacataatatgtacgattaaatcatcaaaattaaa |
17057382 |
T |
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