View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3725_low_19 (Length: 212)
Name: NF3725_low_19
Description: NF3725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3725_low_19 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 42830467 - 42830266
Alignment:
| Q |
11 |
ctgtgatatttttccgctgtagaagccacagtatggataggaggaaagcagatacaaacctttccattatatggaatgctaagtgctgtgagtagaagag |
110 |
Q |
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| T |
42830467 |
ctgtgatacttttccactgtagaagccacagtatggataggaggaaagcagatacaaacctttccattatatggaatgctaagtgctgtgagtagaagag |
42830368 |
T |
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| Q |
111 |
agtatccagtgaaaactcctacttcaattgtctttttagcatttagaagtttcaagagcaaagccattagctgacccgcatcaggtgatgtgcccatgaa |
210 |
Q |
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| T |
42830367 |
agtatccagtgaaaactcctacttcaattgtctttttagcatttagaagtttcaagagcaaagccattagctgacccgcatcaggtgatgtgcccatgaa |
42830268 |
T |
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| Q |
211 |
gc |
212 |
Q |
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| T |
42830267 |
gc |
42830266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 7589067 - 7589213
Alignment:
| Q |
65 |
caaacctttccattatatggaatgctaagtgctgtgagtagaagagagtatccagtgaaaactcctacttcaattgtctttttagcatttagaagtttca |
164 |
Q |
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| T |
7589067 |
caaacctttccatcatcaggaatgttaagtgctgtgagtagaagagagtatccagtgaaaactccaatttcaattgtctttttagcattcaacagcttca |
7589166 |
T |
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| Q |
165 |
agagcaaagccattagctgacccgcatcagg-tgatgtgcccatgaag |
211 |
Q |
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| T |
7589167 |
agagtatgcccattaacttacccgcatcaggatga-gtgcccatgaag |
7589213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 34531799 - 34531881
Alignment:
| Q |
65 |
caaacctttccattatatggaatgctaagtgctgtgagtagaagagagtatccagtgaaaactcctacttcaattgtcttttt |
147 |
Q |
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| T |
34531799 |
caaacctttccatcgtcgggaatgttgagtgcagtgaggagaagagagtatccagtaaacactccaacttcaattgtcttttt |
34531881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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