View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3725_low_2 (Length: 576)
Name: NF3725_low_2
Description: NF3725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3725_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Original strand, 42829738 - 42830164
Alignment:
| Q |
16 |
cattcttgacgtgaaagatcctataacaataaacccattcactgaaaatttatccttattcgtaccttggctttgtatgcagagaaaaataatggacaaa |
115 |
Q |
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| T |
42829738 |
cattcttgacgtgaaagatcctataacaataaactcattcactgaaaatttatccttattcgtaccttggctttgtatgcagagaaaaataatggacaaa |
42829837 |
T |
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| Q |
116 |
atatcagcttccaccaatccagttattttgcagagtgagggcttactcaaggtttacatacgcatctcttgccatttttgttgtaactgtttagattgat |
215 |
Q |
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| T |
42829838 |
atatcagcttccaccaatccagttattttgcagagtgagggcttactcaaggtttacatacgcatctcttgccatttttgttgtaactgtttagattgat |
42829937 |
T |
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| Q |
216 |
ttttcctgcttaattaacatacaattttgtggcagtatatactagaaaccagcgtttacccacgagaagcagagactctcaaagagctgagaaatgcaac |
315 |
Q |
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| T |
42829938 |
ttttcctgcttaattaacatacaattttgtggcagtatatactagaaaccagcgtttacccacgagaagcagagactctcaaagagctgagaaatgcaac |
42830037 |
T |
|
| Q |
316 |
agcaaatcatcctctgtaattattcttaagactactataccatacatccaacctataaattatggaagttgtttaacataacaaaatttgatacgcatac |
415 |
Q |
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| T |
42830038 |
agcaaatcatcctctgtaattattcttaagactactataccatacatccaacctataaattatggaagttgtttaacataacaaaatttgatacgcatac |
42830137 |
T |
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| Q |
416 |
aagatttttcaaacaaaaatagtatga |
442 |
Q |
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| T |
42830138 |
aagatttttcaaacaaaaatagtatga |
42830164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 467 - 563
Target Start/End: Original strand, 42830193 - 42830289
Alignment:
| Q |
467 |
cttgttgaacttgacttcttcagccagcattaggaaactttttcttatgtaatgttattgtaattcttcagtggcttcatgggcacatcacctgatg |
563 |
Q |
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| T |
42830193 |
cttgttgaacttgacttcttcagccagcattaggaaactttttcttatgtaatgttattgtaattcttcagtggcttcatgggcacatcacctgatg |
42830289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 7589373 - 7589321
Alignment:
| Q |
248 |
cagtatatactagaaaccagcgtttacccacgagaagcagagactctcaaaga |
300 |
Q |
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| T |
7589373 |
cagtatatactggaaaccagcgtttacccacgagaaccagagagtctgaaaga |
7589321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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