View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3725_low_3 (Length: 541)
Name: NF3725_low_3
Description: NF3725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3725_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 41 - 535
Target Start/End: Complemental strand, 37965206 - 37964722
Alignment:
| Q |
41 |
ggaaggtgtttatgctgacgatgatgacgtaaagagatgtctgtctgagaaatatggcaaattttctccgtctgaattgaagggaaacaaggagtttaat |
140 |
Q |
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| T |
37965206 |
ggaaggtgtttatgctgacgatgatgacgtaaagagatgtctgtctgagaaatatggcaaattttctccgtctgaattgaagggaaacaaggagtttaat |
37965107 |
T |
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| Q |
141 |
gaggatctactggaaaatgatatacatttaacagtaaggcttcaaattgtttatagtagattgagcattcgttctgtgaggagtgcatttgaagagtctg |
240 |
Q |
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| T |
37965106 |
gaggatctactggaaaatgatatacatttaacagtaaggcttcaaattgtttatagtagattgagcattcgttctgtgaggagtgcatttgaagattctg |
37965007 |
T |
|
| Q |
241 |
ttggaagcagattgcaaaaatatgggggatcagataataaacaattacttcagaggtgaaatggtttcttcagcttcagttatctttttcattggttcag |
340 |
Q |
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| T |
37965006 |
ttggaagcagattgcaaaaatatgggggatcagataataaacaattacttcagaggtgaaatggtttcttcagcttcagttatc-----------ttgag |
37964918 |
T |
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| Q |
341 |
aattacttgtgtagaacttgtt-gaacaataagcacttatgtttatatcactataacactctagaattctctttaagttgtcctttgtttgtatcttttt |
439 |
Q |
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| T |
37964917 |
aattacttgtgtagaacttgttagaacaataagcacatatgtttatatcactataacactctagaattctctttaagttgtcctttgtttgtatcttttt |
37964818 |
T |
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| Q |
440 |
ctgctttaaaaaattaaaagcattttataattgttactagtatcttagatctcataaacctttgaaaactgtattccatgtgtttattcatctcac |
535 |
Q |
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| T |
37964817 |
ctgctttaaaaaattaaaagcattttataattgttactagtatcttagatctcataaacctttgaaaactgtattccatgtgtttattcatttcac |
37964722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 206 - 332
Target Start/End: Original strand, 12628455 - 12628579
Alignment:
| Q |
206 |
cattcgttctgtgaggagtgcatttgaagagtctgttggaagcagattgcaaaaatatgggggatcagataataaacaattacttcagaggtgaaatggt |
305 |
Q |
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|||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| | |
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| T |
12628455 |
catttgttctttgaggagtgcatttgaagagtctgatggaagcagattgcaaaaatat-ggggatcagataataaagaattgcttcagaggtgaaatgat |
12628553 |
T |
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| Q |
306 |
ttcttcagcttcagttatctttttcat |
332 |
Q |
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| T |
12628554 |
atcttcaacttga-ttatctttttcat |
12628579 |
T |
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