View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3725_low_5 (Length: 432)
Name: NF3725_low_5
Description: NF3725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3725_low_5 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] scaffold0415 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 176 - 432
Target Start/End: Original strand, 13212184 - 13212440
Alignment:
| Q |
176 |
catgatgagaaaagtgattaagtgaataacatttttggttaaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattga |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13212184 |
catgatgagaaaagtgattaagtgaataacatttttggttaaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattga |
13212283 |
T |
|
| Q |
276 |
gaagattttgaggaactccatggaaaagtgatgaagcattaggatctgctacaagttgttgctgttgctggttctgctgctgttgttgttgacttcccat |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13212284 |
gaagattttgaggaactccatggaaaagtgatgaagcattaggatctgctacaagttgttgctgttgctggttctgctgctgttgttgttgacttcccat |
13212383 |
T |
|
| Q |
376 |
ggttcccggtgaccctaaccctccatttcctggcacattcactggcgtatcttcatc |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
13212384 |
ggttcccggtgaccctaaccctccatttcctggcacattcactggtgtttcttcatc |
13212440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 13212016 - 13212103
Alignment:
| Q |
9 |
acatcatcaagtagtcaacttaataccatgatcaaagaaaagtcttcaatttaaactaagttataaggagaatgaacaagtgatagat |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13212016 |
acatcatcaagtagtcaacttaataccatgatcaaagaaaagtcttcaatttaaactaagttataaggagaatgaacaagtgatagat |
13212103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 293
Target Start/End: Complemental strand, 13555 - 13478
Alignment:
| Q |
216 |
aaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagattttgaggaactc |
293 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||| | |||||||| |||||||| ||| ||||||| |||||| |
|
|
| T |
13555 |
aaaatggaggacgagcacttccacaccaataaccttcatgtagtaattggtatgaattgtgaaaattttgaagaactc |
13478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 29845934 - 29846011
Alignment:
| Q |
216 |
aaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagattttgaggaactc |
293 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||| | |||||||| |||||||| ||| ||||||| |||||| |
|
|
| T |
29845934 |
aaaatggaggacgagcacttccacaccaataaccttcatgtagtaattggtatgaattgtgaaaattttgaagaactc |
29846011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University