View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3725_low_6 (Length: 409)
Name: NF3725_low_6
Description: NF3725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3725_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 44864007 - 44864403
Alignment:
| Q |
1 |
gttctgaaaccctaatctgtgatgttggaggaggaaccaatgattcaatggacacactttctgtttctgaagggaaagtaggaaaattttcatgtgggtt |
100 |
Q |
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| T |
44864007 |
gttctcaaaccctaatctgtgatgttggaggaggaaccaatggttcaatggacacactttctgtttctgaagggaaagtaggaaaattttcatgtgggtt |
44864106 |
T |
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| Q |
101 |
ggtgaaaaatgaagaggagaaaagtgtgattcaatgttctgatggaggtgcaatgtctgatcaaggtttggtttttgaattgaatgatggtgttcaggtt |
200 |
Q |
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| T |
44864107 |
ggtgaaaaatgaagaggagaaaagtgtgattcaatgttctgatggaggtgcaatgtctgatcaaggtttggtttttgaattgaatgatggtgttcaggtt |
44864206 |
T |
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| Q |
201 |
gaacagcagcgtgagaatgtggggaaagttgcattgagtaatgaggttcaaggagttgaagatgatgtgactgagcacgaacaagagaacggggctaaaa |
300 |
Q |
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| T |
44864207 |
gaacagcagcgtgagaatgtggggaaagttgcattgagtaatgaggttcaaggagttgaagatgatgtgactgagcacgaacaagagaacggggctaaaa |
44864306 |
T |
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| Q |
301 |
acgttgctttaagcacggttgtggaggatggcagtgttttaaaagctgctgatagttttgttgctactaaatatgatcctgaagattctcgtgtctc |
397 |
Q |
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| T |
44864307 |
acgttgctttaagcacggttgtggaggatggcggtgttttaaaagctgctgatagttttgttgctactaaatatgatcctgaagattctcgtgtctc |
44864403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 214 - 397
Target Start/End: Complemental strand, 45248339 - 45248156
Alignment:
| Q |
214 |
agaatgtggggaaagttgcattgagtaatgaggttcaaggagttgaagatgatgtgactgagcacgaacaagagaacggggctaaaaacgttgctttaag |
313 |
Q |
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| T |
45248339 |
agaatgtagggaaagttgcattgagtaatgaggttcaaggagttgaagatgatgtgactgagcacaagcacgagaacgatgttgctttggcaaattttag |
45248240 |
T |
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| Q |
314 |
cacggttgtggaggatggcagtgttttaaaagctgctgatagttttgttgctactaaatatgatcctgaagattctcgtgtctc |
397 |
Q |
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| T |
45248239 |
tgcagttgtggaggatgacggtgttttaaaagctgctgatagttttgttgttactaaagatgattctgaagattctcgtgtctc |
45248156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 45248412 - 45248353
Alignment:
| Q |
72 |
gggaaagtaggaaaattttcatgtgggttggtgaaaaatgaagaggagaaaagtgtgatt |
131 |
Q |
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| T |
45248412 |
gggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtgtgatt |
45248353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 72 - 275
Target Start/End: Complemental strand, 28754777 - 28754574
Alignment:
| Q |
72 |
gggaaagtaggaaaattttcatgtgggttggtgaaaaatgaagaggagaaaagtgtgattcaatgttctgatggaggtgcaatgtctgatcaaggtttgg |
171 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
28754777 |
gggaaaggaggaaaattttcatgtgggttggtgaagaatgatgatgagaaaagtgtgattcaatgttctgatggaggtgcagagtctgataaaggtttgg |
28754678 |
T |
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| Q |
172 |
tttttgaattgaatgatggtgttcaggttgaacagcagcgtgagaatgtggggaaagttgcattgagtaatgaggttcaaggagttgaagatgatgtgac |
271 |
Q |
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| T |
28754677 |
tttttggattgaatgatggtgttcagatcaaacaggagggcgaggatgtggagaaagttgcattgagtaacgagcttcaaggagttaaagatgatgtgac |
28754578 |
T |
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| Q |
272 |
tgag |
275 |
Q |
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|||| |
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| T |
28754577 |
tgag |
28754574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 399
Target Start/End: Complemental strand, 28754538 - 28754450
Alignment:
| Q |
308 |
tttaagcacggttgtggaggatggcagtgttttaaaagctgctgatagttttgttgctactaaatatgatcctgaagattctcgtgtctctg |
399 |
Q |
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||||||| ||| ||||||||||| |||| |||||||||||||| |||||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
28754538 |
tttaagcgcggctgtggaggatgaaggtgtgataaaagctgctgattgttttgtt---actaaagatgatcctgaagattctagtgtctctg |
28754450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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