View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3725_low_8 (Length: 333)

Name: NF3725_low_8
Description: NF3725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3725_low_8
NF3725_low_8
[»] chr1 (4 HSPs)
chr1 (11-324)||(7298540-7298860)
chr1 (11-208)||(47124620-47124819)
chr1 (166-199)||(6815264-6815297)
chr1 (166-199)||(28700026-28700059)
[»] chr4 (7 HSPs)
chr4 (11-208)||(11882873-11883067)
chr4 (11-208)||(33018514-33018715)
chr4 (11-209)||(35347149-35347347)
chr4 (11-208)||(33432739-33432932)
chr4 (166-202)||(23668224-23668260)
chr4 (167-203)||(52106253-52106289)
chr4 (157-208)||(23669246-23669297)
[»] chr3 (4 HSPs)
chr3 (11-205)||(12008925-12009126)
chr3 (11-142)||(47669117-47669248)
chr3 (11-134)||(51985886-51986008)
chr3 (157-208)||(51985799-51985850)
[»] chr8 (6 HSPs)
chr8 (11-141)||(34053192-34053322)
chr8 (157-207)||(34053125-34053175)
chr8 (157-208)||(9370102-9370153)
chr8 (166-199)||(9369095-9369128)
chr8 (166-199)||(9404158-9404191)
chr8 (166-199)||(9406319-9406352)
[»] chr6 (1 HSPs)
chr6 (11-206)||(6535153-6535350)
[»] chr7 (4 HSPs)
chr7 (11-130)||(26761474-26761592)
chr7 (157-209)||(47817419-47817471)
chr7 (167-203)||(41806607-41806643)
chr7 (166-202)||(47818448-47818484)
[»] chr5 (1 HSPs)
chr5 (19-208)||(43070065-43070260)
[»] chr2 (1 HSPs)
chr2 (166-199)||(11873284-11873317)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 7298540 - 7298860
Alignment:
Q  11 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  7298540 cagagagggatattagagaaaggtgaaagctcatgagagttgagaaggaagaagacaaaggaaaatataattaagtgtatttgatctatggtgtgtttaa 7298639  T
Q  111 ccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnnnnn-------gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacg 203  Q
    ||||||||||||||||||||||||| || |||                     ||||||||||||||||||||||||||| |||||||| ||||||||||    
T  7298640 ccaatctaacggttaggaaatgtcataacgtcaaaaaaaaaaaacaaaaaaaagaggtcatgcacggtaggagacctatataggtctcctaccctaaacg 7298739  T
Q  204 ccgcctagtttcgatagtaaacttcaagtttgaatcaaattttaaaatgaaaatcaattcttattgaaatcaccctaaataagtcaaaattttgtgtatg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7298740 ccgcctagtttcgatagtaaacttcaagtttgaatcaaattttaaaatcaaaatcaattcttattgaaatcaccctaaataagtcaaaattttgtgtatg 7298839  T
Q  304 aaatcacttttatctctatct 324  Q
    ||||| |||||||||||||||    
T  7298840 aaatcccttttatctctatct 7298860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 47124819 - 47124620
Alignment:
Q  11 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 110  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||| ||    
T  47124819 cagagagggatattagagaaaggtaaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaggtgtatttgatctatggtgtgttcaa 47124720  T
Q  111 ccaatctaacggttaggaaatgtcagaaggtc--nnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 208  Q
    |||||||||||||||||||| ||| |||| ||                |||||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  47124719 ccaatctaacggttaggaaaggtctgaagatcaaaaaaaaaaaaaaaagaggtcatgcacagtagaagatctataaaggtctcccaccctaaacgccgcc 47124620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 6815297 - 6815264
Alignment:
Q  166 cacggtaggagacctataaaggtctcccacccta 199  Q
    ||||||||||||||||| ||||||||||||||||    
T  6815297 cacggtaggagacctatcaaggtctcccacccta 6815264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 28700026 - 28700059
Alignment:
Q  166 cacggtaggagacctataaaggtctcccacccta 199  Q
    ||||||||||||||||| ||||||||||||||||    
T  28700026 cacggtaggagacctattaaggtctcccacccta 28700059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 11882873 - 11883067
Alignment:
Q  11 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 110  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| ||    
T  11882873 cagagagggatatcagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgttcaa 11882972  T
Q  111 ccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 208  Q
    |||||||||||||||||||| ||| |||||||              |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11882973 ccaatctaacggttaggaaaagtccgaaggtc---aaaaaaaaaaagaggccatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 11883067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 33018514 - 33018715
Alignment:
Q  11 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 110  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||| ||    
T  33018514 cagagagggatatcaaagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatgatgtgttcaa 33018613  T
Q  111 ccaatctaacggttaggaaatgtcagaaggtc----nnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 206  Q
    ||||||||||| || | ||| |||  ||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33018614 ccaatctaacgattggaaaaggtccaaaggtcaaaaaaaaaaaaaaaaaagaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 33018713  T
Q  207 cc 208  Q
    ||    
T  33018714 cc 33018715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 35347149 - 35347347
Alignment:
Q  11 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 110  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||| |||||||||    
T  35347149 cagagagggatatcagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaaaataatcaagtgtattcgatctatgatgtgtttaa 35347248  T
Q  111 ccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcct 209  Q
    | ||| |||||||||| ||| |||| || |||               | ||||||||||||||| |||||||||||||||||||||||| |||| ||||    
T  35347249 ctaatttaacggttagaaaaagtcataaagtcaaaaaaaaaaaaaaaaagtcatgcacggtaggggacctataaaggtctcccaccctagacgcagcct 35347347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 33432932 - 33432739
Alignment:
Q  11 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 110  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||  ||||||||| |||||||||||||| ||    
T  33432932 cagagagggatat-agagaaaggggaaagctcatgagagttgagagggaagaagacaaatgaaaagataattcagtgtatttaatctatggtgtgttcaa 33432834  T
Q  111 ccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 208  Q
    ||||||||||  ||||||||  || |||| ||               | |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33432833 ccaatctaactattaggaaagatccgaagttcaaaaaaaaaaaa---atgtcatgcacggtaggagatctataaaggtctcccaccctaaacgccgcc 33432739  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 23668260 - 23668224
Alignment:
Q  166 cacggtaggagacctataaaggtctcccaccctaaac 202  Q
    ||||||||||||||||| |||||||||||||||||||    
T  23668260 cacggtaggagacctattaaggtctcccaccctaaac 23668224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 52106253 - 52106289
Alignment:
Q  167 acggtaggagacctataaaggtctcccaccctaaacg 203  Q
    ||||||||||||||| |||||||||||||||||||||    
T  52106253 acggtaggagacctaaaaaggtctcccaccctaaacg 52106289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 23669246 - 23669297
Alignment:
Q  157 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 208  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || |||||    
T  23669246 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 23669297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 12009126 - 12008925
Alignment:
Q  11 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  12009126 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaatataatcaagtgtatttgatctatggtgtgtttaa 12009027  T
Q  111 ccaatctaacggttaggaaatgtcagaaggtc-------nnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacg 203  Q
    |||||||||||||||| |||||||||||| ||                     |||||||||||||||||||||||||||||||||||||||||||||||    
T  12009026 ccaatctaacggttagaaaatgtcagaagatcaaaaaaaaaaaaaaaaaaaaagaggtcatgcacggtaggagacctataaaggtctcccaccctaaacg 12008927  T
Q  204 cc 205  Q
    ||    
T  12008926 cc 12008925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 47669117 - 47669248
Alignment:
Q  11 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 110  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||||||    
T  47669117 cagagaggaatatgagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctctggtgtgtttaa 47669216  T
Q  111 ccaatctaacggttaggaaatgtcagaaggtc 142  Q
    ||||||||||||||||||||||| ||||||||    
T  47669217 ccaatctaacggttaggaaatgtgagaaggtc 47669248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 51986008 - 51985886
Alignment:
Q  11 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 110  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||| |||||||    
T  51986008 cagagaggtatat-agagaaaggtgaaagctcatgagagttgagaggaaagaagacaaatgaaaagataatcaagtgtatttgatctatggtatgtttaa 51985910  T
Q  111 ccaatctaacggttaggaaatgtc 134  Q
    ||||||||||||||||||||||||    
T  51985909 ccaatctaacggttaggaaatgtc 51985886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 51985850 - 51985799
Alignment:
Q  157 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 208  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||| |||||    
T  51985850 gaggtcatgtacggtaggagacctataaagatctcccaccctaaacaccgcc 51985799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 34053322 - 34053192
Alignment:
Q  11 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 110  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  34053322 cagagagggatatcagagaaaggtaaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaa 34053223  T
Q  111 ccaatctaacggttaggaaatgtcagaaggt 141  Q
    |||||||||||||||||||||||||||||||    
T  34053222 ccaatctaacggttaggaaatgtcagaaggt 34053192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 34053175 - 34053125
Alignment:
Q  157 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgc 207  Q
    ||||| ||||| |||||||||||||||||||| |||||||||| |||||||    
T  34053175 gaggtaatgcatggtaggagacctataaaggtttcccaccctacacgccgc 34053125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 9370102 - 9370153
Alignment:
Q  157 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 208  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || |||||    
T  9370102 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 9370153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 9369128 - 9369095
Alignment:
Q  166 cacggtaggagacctataaaggtctcccacccta 199  Q
    ||||||||||||||||| ||||||||||||||||    
T  9369128 cacggtaggagacctattaaggtctcccacccta 9369095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 9404191 - 9404158
Alignment:
Q  166 cacggtaggagacctataaaggtctcccacccta 199  Q
    ||||||||||||||||| ||||||||||||||||    
T  9404191 cacggtaggagacctattaaggtctcccacccta 9404158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 9406352 - 9406319
Alignment:
Q  166 cacggtaggagacctataaaggtctcccacccta 199  Q
    ||||||||||||||||| ||||||||||||||||    
T  9406352 cacggtaggagacctattaaggtctcccacccta 9406319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 6535153 - 6535350
Alignment:
Q  11 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || |||||||||||| ||||||||| ||    
T  6535153 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttgatctgtggtgtgttcaa 6535252  T
Q  111 ccaatctaacggttaggaaatgtcagaaggtc--nnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 206  Q
     |||||||||| |||||||| ||| |||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6535253 tcaatctaacgattaggaaaggtccgaaggtcaaaaaaaaaaaaaaaagaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 6535350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 26761592 - 26761474
Alignment:
Q  11 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 110  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  26761592 cagagagggatat-agagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaa 26761494  T
Q  111 ccaatctaacggttaggaaa 130  Q
    ||||||||||||||||||||    
T  26761493 ccaatctaacggttaggaaa 26761474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 47817471 - 47817419
Alignment:
Q  157 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcct 209  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || ||||||    
T  47817471 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcct 47817419  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 41806643 - 41806607
Alignment:
Q  167 acggtaggagacctataaaggtctcccaccctaaacg 203  Q
    |||||||||||||||  ||||||||||||||||||||    
T  41806643 acggtaggagacctaagaaggtctcccaccctaaacg 41806607  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 47818448 - 47818484
Alignment:
Q  166 cacggtaggagacctataaaggtctcccaccctaaac 202  Q
    ||||||||||||||| | |||||||||||||||||||    
T  47818448 cacggtaggagacctgttaaggtctcccaccctaaac 47818484  T

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Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 43070065 - 43070260
Alignment:
Q  19 gatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaaccaatcta 118  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||    
T  43070065 gatatcagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatgatgtgtttaaccaatcta 43070164  T
Q  119 acggttaggaaatgtcagaaggtcnnnnnnnnnnnnnn------gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 208  Q
    |||||||||||| ||| ||||||                     ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43070165 acggttaggaaaggtccgaaggttaaaaaaaaaaaaaaaaaaaagaggtcatgtacggtaggagacctataaaggtctcccaccctaaacgccgcc 43070260  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 11873317 - 11873284
Alignment:
Q  166 cacggtaggagacctataaaggtctcccacccta 199  Q
    ||||||||||||||||| ||||||||||||||||    
T  11873317 cacggtaggagacctatcaaggtctcccacccta 11873284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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