View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3725_low_9 (Length: 331)
Name: NF3725_low_9
Description: NF3725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3725_low_9 |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 41865834 - 41865510
Alignment:
| Q |
7 |
ggtgcaacgaaccctatccttaatgccccatgggttgctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgttc |
106 |
Q |
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|||||||||| ||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41865834 |
ggtgcaacgatccctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtggctctaatgttc |
41865735 |
T |
|
| Q |
107 |
aaagtttattatctgagcatagttaaagctggaacgcgcctcttgctcaaaacatttttagtaacgacatagctgaaaaaattatgcatacacccttgta |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41865734 |
aaagtttattatctgagcatagttaaagctggaacgcgcctcttgttcaacagatttttagtaacgacatagctgaaaaaattatgcatacgcccttgta |
41865635 |
T |
|
| Q |
207 |
tgatcaagtcagccatgatcgtctcaaatggaaagcggaaagtaatggttgttattcgatgcagagcgcataccgcttatgtgtggaagaattaattgat |
306 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41865634 |
tgatcaagtcagccatgatcgtctcatatggaaagcggaaagtaatggttgttattcggtgcggagcgcataccgcttatgtgtggaagaattaattgat |
41865535 |
T |
|
| Q |
307 |
gtgtctcatctccgtcgtcccggta |
331 |
Q |
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||||||||||||||||||||||||| |
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| T |
41865534 |
gtgtctcatctccgtcgtcccggta |
41865510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 17207475 - 17207151
Alignment:
| Q |
7 |
ggtgcaacgaaccctatccttaatgccccatgggttgctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgttc |
106 |
Q |
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|||||||| | |||||| ||| |||| |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| |
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| T |
17207475 |
ggtgcaacaatccctattcttcatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttatatgttcgtgattttaatgttc |
17207376 |
T |
|
| Q |
107 |
aaagtttattatctgagcatagttaaagctggaacgcgcctcttgctcaaaacatttttagtaacgacatagctgaaaaaattatgcatacacccttgta |
206 |
Q |
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||||||||||||||||||||||| |||| ||||| ||||||||| |||| | |||||||||||| |||||||||||| ||| ||||||||||| |||| |
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| T |
17207375 |
aaagtttattatctgagcatagtaaaagtcggaacacgcctcttgttcaatagatttttagtaacaacatagctgaaacaatattgcatacacccatgta |
17207276 |
T |
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| Q |
207 |
tgatcaagtcagccatgatcgtctcaaatggaaagcggaaagtaatggttgttattcgatgcagagcgcataccgcttatgtgtggaagaattaattgat |
306 |
Q |
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|||| |||| | |||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||| |||||| | ||||||||||||| ||||||||| |
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| T |
17207275 |
tgattaagttatccatgatcgtctcatatggaaagcggaaagtaatggctgttattcggtgcggagtgcatacaacatatgtgtggaagagttaattgat |
17207176 |
T |
|
| Q |
307 |
gtgtctcatctccgtcgtcccggta |
331 |
Q |
| |
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|||||||| ||||||||||| |||| |
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| T |
17207175 |
gtgtctcacctccgtcgtccaggta |
17207151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 44 - 331
Target Start/End: Original strand, 33479228 - 33479515
Alignment:
| Q |
44 |
ctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgttcaaagtttattatctgagcatagttaaagctggaacgc |
143 |
Q |
| |
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||||||| ||||| ||||||||| |||| ||| || || |||||| | || | |||||| ||||| || ||| ||||||| || | || ||||||| |
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| T |
33479228 |
ctaatggtgagtctattgatggtcacatcattggaggcttctatgtttgcgattttaatgtccaaagcttgttacatgagcatggtaagagttggaacga |
33479327 |
T |
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| Q |
144 |
gcctcttgctcaaaacatttttagtaacgacatagctgaaaaaattatgcatacacccttgtatgatcaagtcagccatgatcgtctcaaatggaaagcg |
243 |
Q |
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|||||||| || | | ||||||||||| ||||||||||| |||| |||||||| || ||||||||||||||| |||||||||| ||| ||||||||| |
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| T |
33479328 |
gcctcttgttcgacagatttttagtaatgacatagctgatgcaattttgcatacaaccctgtatgatcaagtcacccatgatcgtatcatttggaaagcg |
33479427 |
T |
|
| Q |
244 |
gaaagtaatggttgttattcgatgcagagcgcataccgcttatgtgtggaagaattaattgatgtgtctcatctccgtcgtcccggta |
331 |
Q |
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||| | |||||||||||| || | | ||| |||||| |||||||||||||| ||||||||||| |||||||| |||||||| |||| |
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| T |
33479428 |
gaaggaaatggttgttatacggtacggagtgcatacaaattatgtgtggaagagttaattgatgtttctcatcttcgtcgtccaggta |
33479515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 314
Target Start/End: Complemental strand, 27011010 - 27010742
Alignment:
| Q |
46 |
aatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgttcaaagtttattatctgagcatagttaaagctggaacgcgc |
145 |
Q |
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||||||||||| || |||||||| || |||| || |||||||||||||| | ||||||||||| |||||||| || ||| | | || ||||||| || |
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| T |
27011010 |
aatggcgagtctatagatggtaatatagctgaaggcttttatgttcgtgatttcaatgttcaaagcttattatcggatcatggcaagagttggaacgtgc |
27010911 |
T |
|
| Q |
146 |
ctcttgctcaaaacatttttagtaacgacatagctgaaaaaattatgcatacacccttgtatgatcaagtcagccatgatcgtctcaaatggaaagcgga |
245 |
Q |
| |
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|||| | ||| | ||||||||| |||||||||||| | || ||||||| || ||||||||||||| | ||||| |||| | |||||| |||| |
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| T |
27010910 |
ctctagtccaacaaatttttagtgctgacatagctgaagcagttttgcatacgcctctgtatgatcaagttattcatgactgtcttatttggaaatcgga |
27010811 |
T |
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| Q |
246 |
aagtaatggttgttattcgatgcagagcgcataccgcttatgtgtggaagaattaattgatgtgtctca |
314 |
Q |
| |
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||| || ||||||||| |||||| ||| ||||| || |||||||| ||||| |||||||||| ||||| |
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| T |
27010810 |
aagaaacggttgttatccgatgcggagtgcatatcgattatgtgtcgaagagctaattgatgtttctca |
27010742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 17177646 - 17177958
Alignment:
| Q |
19 |
cctatccttaatgccccatgggttgctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgttcaaagtttattat |
118 |
Q |
| |
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||||| ||| |||| |||||| | || |||||| |||| || |||||||| || |||| || |||||||||||||| | ||||||||||| ||||||| |
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| T |
17177646 |
cctattcttgatgcaccatggttggccaatggcaagtctatagatggtaaaatagctgaaggcttttatgttcgtgatttcaatgttcaaagcttattat |
17177745 |
T |
|
| Q |
119 |
ctgagcatagttaaagctggaacgcgcctcttgctcaaaacatttttagtaacgacatagctgaaaaaattatgcatacacccttgtatgatcaagtcag |
218 |
Q |
| |
|
| || ||| | | || ||||||| |||||| | ||| | |||||||||| |||||||||||| | || ||||||| || |||||||||||| | |
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| T |
17177746 |
cggatcatggcaagagttggaacgtgcctctagtccaacagatttttagtactgacatagctgaagcagttttgcatacgcctcagtatgatcaagttat |
17177845 |
T |
|
| Q |
219 |
ccatgatcgtctcaaatggaaagcggaaagtaatggttgttattcgatgcagagcgcataccgcttatgtgtggaagaattaattgatgtgtctcatctc |
318 |
Q |
| |
|
||||| ||||||| |||||| ||||||| || |||||||||||| ||| ||| ||||| || |||||||| ||||| |||||||||| ||||| || |
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| T |
17177846 |
tcatgaccgtctcatttggaaatcggaaagaaacggttgttattcggtgcggagtgcatatcgattatgtgtcgaagagctaattgatgtttctcacctg |
17177945 |
T |
|
| Q |
319 |
cgtcgtcccggta |
331 |
Q |
| |
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||| |||| |||| |
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| T |
17177946 |
cgttgtccaggta |
17177958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 246
Target Start/End: Complemental strand, 12527909 - 12527707
Alignment:
| Q |
44 |
ctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgttcaaagtttattatctgagcatagttaaagctggaacgc |
143 |
Q |
| |
|
||||||||||||| |||||||||||||| | ||| ||| ||||||||| ||| | ||||||||| | ||||| | |||||| || | || ||||||| |
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| T |
12527909 |
ctaatggcgagtctattgatggtaacatagttggaggtctttatgttcatgatttcaatgttcaacgcttatttttagagcatggtaagagttggaacgt |
12527810 |
T |
|
| Q |
144 |
gcctcttgctcaaaacatttttagtaacgacatagctgaaaaaattatgcatacacccttgtatgatcaagtcagccatgatcgtctcaaatggaaagcg |
243 |
Q |
| |
|
|||||||| |||| | | ||||||||| ||||||| |||| ||| ||||||| ||| ||||||||||||| | ||||| ||||||| ||||||||| |
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|
| T |
12527809 |
gcctcttgttcaacagaattttagtaatgacatagttgaagcaatcttgcatacgcccctgtatgatcaagttattcatgaccgtctcatttggaaagcg |
12527710 |
T |
|
| Q |
244 |
gaa |
246 |
Q |
| |
|
||| |
|
|
| T |
12527709 |
gaa |
12527707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 317
Target Start/End: Original strand, 14484427 - 14484600
Alignment:
| Q |
144 |
gcctcttgctcaaaacatttttagtaacgacatagctgaaaaaattatgcatacacccttgtatgatcaagtcagccatgatcgtctcaaatggaaagcg |
243 |
Q |
| |
|
|||||||| |||| | || |||||||| |||||||||||| ||| | ||||| ||| ||||||||||||| | | | ||| |||| ||||||||| |
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|
| T |
14484427 |
gcctcttgttcaacagatgtttagtaatgacatagctgaagcgattttacatacgcccctgtatgatcaagttaccaacgattgtcttgtttggaaagcg |
14484526 |
T |
|
| Q |
244 |
gaaagtaatggttgttattcgatgcagagcgcataccgcttatgtgtggaagaattaattgatgtgtctcatct |
317 |
Q |
| |
|
||||| ||||||||||||||| ||| ||| ||||| || |||| ||||||||||||||||||||| || ||||| |
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|
| T |
14484527 |
gaaagaaatggttgttattcggtgcggagtgcatatcgtttatatgtggaagaattaattgatgtttcccatct |
14484600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 215
Target Start/End: Complemental strand, 13701791 - 13701621
Alignment:
| Q |
45 |
taatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgttcaaagtttattatctgagcatagttaaagctggaacgcg |
144 |
Q |
| |
|
|||||| |||| ||||||| |||||| ||||| ||| |||||||| |||| | ||||||||||| |||||||| |||||| || | || ||||| | | |
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|
| T |
13701791 |
taatggtgagtttattgatgataacatagctggaggtctttatgtttgtgatttcaatgttcaaagcttattatcggagcatggtaagagttggaatgtg |
13701692 |
T |
|
| Q |
145 |
cctcttgctcaaaacatttttagtaacgacatagctgaaaaaattatgcatacacccttgtatgatcaagt |
215 |
Q |
| |
|
||||| | |||| | ||||||||||| |||||||||||| ||| ||||||| || ||||||||||||| |
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|
| T |
13701691 |
cctctggttcaacagatttttagtaatgacatagctgaagcgattttgcatacgccactgtatgatcaagt |
13701621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 316
Target Start/End: Complemental strand, 13812759 - 13812663
Alignment:
| Q |
220 |
catgatcgtctcaaatggaaagcggaaagtaatggttgttattcgatgcagagcgcataccgcttatgtgtggaagaattaattgatgtgtctcatc |
316 |
Q |
| |
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||||||||| ||| |||||||||||||| ||||||||||||||| | ||| || || | ||||||||||||||||||| | ||||| ||||||| |
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| T |
13812759 |
catgatcgtttcatttggaaagcggaaaggaatggttgttattcggtaaggagtgcttatcacttatgtgtggaagaattagtggatgtttctcatc |
13812663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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