View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_high_103 (Length: 256)
Name: NF3726_high_103
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_103 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 42126797 - 42126572
Alignment:
| Q |
19 |
caaactatgctcttactcctgaaatgtccatctattcaattgcctttgtcaaatggtgggcgctttataaaagccaggaaatttcttccaaagttctggc |
118 |
Q |
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| T |
42126797 |
caaactacgctcttactcctgaaatgtccatctattcaattgcctttgtcaaatggtgggcgctttataaaagccaggaaatttcttccaaagttctggc |
42126698 |
T |
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| Q |
119 |
tacacacctcaaaggaactgtgtttctgaattactggtttgagatacttggtgcaagaattggttcctcagttttgattgacacggttgacatcacagac |
218 |
Q |
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| T |
42126697 |
tacacacctcaaaggaactgtgtttctgaattactggtttgagatacttggtgcaagaattggttcctcagttttgattgacacggttgacatcacagac |
42126598 |
T |
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| Q |
219 |
ccgtctctagtttcaattggtgatga |
244 |
Q |
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| T |
42126597 |
ccgtctctagtttcaattggtgatga |
42126572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 45 - 220
Target Start/End: Complemental strand, 24930066 - 24929891
Alignment:
| Q |
45 |
tccatctattcaattgcctttgtcaaatggtgggcgctttataaaagccaggaaatttcttccaaagttctggctacacacctcaaaggaactgtgtttc |
144 |
Q |
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||||||||||||| | |||||||| ||||||||||| ||||| | || |||||||| || |||||| ||||||||||||||| |||||| ||||||| |
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| T |
24930066 |
tccatctattcaacggattttgtcaagtggtgggcgctatataagactcaagaaatttcctctaaagttttggctacacacctcagaggaacagtgtttc |
24929967 |
T |
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| Q |
145 |
tgaattactggtttgagatacttggtgcaagaattggttcctcagttttgattgacacggttgacatcacagaccc |
220 |
Q |
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| T |
24929966 |
taaagtactggtttgaaatgttgggagcaagaattggatcctcagttctgcttgatacagttgacatcacggaccc |
24929891 |
T |
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