View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_high_106 (Length: 253)
Name: NF3726_high_106
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_106 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 23896188 - 23896430
Alignment:
| Q |
1 |
cgaaagaggtaggagatggctgcaagcaatcaaataaatagttagagtaagtttttacgtgtccaataatagcaatagtaatgataataatcgaaagaaa |
100 |
Q |
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| T |
23896188 |
cgaaagaggtaggagatggctgcaagcaatcaaataaatggttcaagtaagtttttacgtgtccaataatagcaatagtaatgataataatcgaaagaaa |
23896287 |
T |
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| Q |
101 |
aagattttaccctattctcggggtggaagcaagggtgaatgacgccgttcatgtcaaggtaaaggttgtcgtattcattgttgttagggtttttcatact |
200 |
Q |
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| T |
23896288 |
aagattttaccctattctcggggtggaagcaagggtgaatgacgccgttcatgtcaaggtaaaggttgtcgtattcattgttgttagggtttttcatact |
23896387 |
T |
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| Q |
201 |
tgtgttgacagggatttgaatgtcatcgataaccacaggttct |
243 |
Q |
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| T |
23896388 |
tgtgttgacagggatttgaatgccatcgataaccacaggttct |
23896430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 23184155 - 23184396
Alignment:
| Q |
1 |
cgaaagaggtaggagatggctgcaagcaatcaaataaatagttagagtaagtttttacgtgtccaataatagcaatagtaatgataataatcgaaagaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| || | |||| ||||||||||||| |||||||||||||||||| ||||||||||||||| | |
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| T |
23184155 |
cgaaagaggtaggagatggctgcaagcaatcaaataaatcgtca-agtacgtttttacgtgtctaataatagcaatagtaatcataataatcgaaagaga |
23184253 |
T |
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| Q |
101 |
aagattttaccctattctcggggtggaagcaagggtgaatgacgccgttcatgtcaaggtaaaggttgtcgtattcattgttgttagggtttttcatact |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23184254 |
aatattttaccctattctcggggtggaagcaagggtgaatgacgccgttcatgtcaaggtaaaggttgtcgtattcattgttgttagggtttttcatact |
23184353 |
T |
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| Q |
201 |
tgtgttgacagggatttgaatgtcatcgataaccacaggttct |
243 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
23184354 |
tgtgttgacagggatttgaatgccatcgataaccactggttct |
23184396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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