View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_high_108 (Length: 253)

Name: NF3726_high_108
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_high_108
NF3726_high_108
[»] chr4 (7 HSPs)
chr4 (94-203)||(5941320-5941429)
chr4 (1-75)||(8976736-8976810)
chr4 (120-236)||(24844112-24844228)
chr4 (121-237)||(51702695-51702811)
chr4 (156-205)||(49648171-49648220)
chr4 (140-195)||(33114134-33114189)
chr4 (161-201)||(50848409-50848449)
[»] chr2 (6 HSPs)
chr2 (112-242)||(30266341-30266471)
chr2 (97-242)||(25616855-25617001)
chr2 (131-204)||(45632359-45632432)
chr2 (152-205)||(42847991-42848044)
chr2 (137-205)||(42848592-42848660)
chr2 (155-236)||(1678281-1678362)
[»] chr1 (2 HSPs)
chr1 (112-236)||(23732841-23732968)
chr1 (138-230)||(19534689-19534781)
[»] chr8 (3 HSPs)
chr8 (114-217)||(44495055-44495154)
chr8 (189-245)||(17872895-17872953)
chr8 (152-202)||(20105012-20105062)
[»] chr3 (9 HSPs)
chr3 (120-202)||(37915435-37915517)
chr3 (120-237)||(53467194-53467311)
chr3 (131-202)||(1093210-1093281)
chr3 (120-202)||(49308157-49308239)
chr3 (97-194)||(20111849-20111946)
chr3 (131-202)||(50704294-50704365)
chr3 (160-202)||(26250203-26250245)
chr3 (138-230)||(36863930-36864022)
chr3 (120-201)||(46889353-46889434)
[»] chr7 (5 HSPs)
chr7 (120-201)||(9146091-9146172)
chr7 (124-201)||(42745665-42745742)
chr7 (117-204)||(12293490-12293577)
chr7 (120-196)||(32577318-32577394)
chr7 (116-202)||(12294213-12294299)
[»] chr6 (1 HSPs)
chr6 (97-241)||(18970554-18970698)
[»] chr5 (4 HSPs)
chr5 (120-236)||(210356-210472)
chr5 (120-202)||(14098366-14098448)
chr5 (120-202)||(41609534-41609616)
chr5 (111-193)||(4427889-4427971)
[»] scaffold0136 (1 HSPs)
scaffold0136 (120-202)||(23669-23751)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 5941429 - 5941320
Alignment:
Q  94 ggtattttaaataagatgactttttaaatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaa 193  Q
    |||||||||||| ||| ||||||||||| ||||||  ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5941429 ggtattttaaatgagaggactttttaaacgagagggtgagaggaattaatatagacagttagatctaaatcaacgcttcagatataattgctcattaaaa 5941330  T
Q  194 agggtcatgt 203  Q
    ||||||||||    
T  5941329 agggtcatgt 5941320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 8976810 - 8976736
Alignment:
Q  1 cattttaataacttaaatatattatcctacgttaatatttagaatatttaaatgcattattataaaatatagttg 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8976810 cattttaataacttaaatatattatcctacgttaatatttagaatatttaaatgcattattataaaatatagttg 8976736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 24844112 - 24844228
Alignment:
Q  120 aatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatgtacgggaacctccaccc 219  Q
    |||||||| | ||||||||||||| |  ||  ||||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||   |||||| |||     
T  24844112 aatgagagaatgagagaaattaatctgaaccattggatcaaaatcaacgcttcagatttaattgctctttaaaaagggtcatgcactacaacctctacct 24844211  T
Q  220 tttctcttctccactct 236  Q
    ||  |||||||||||||    
T  24844212 ttcatcttctccactct 24844228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 51702695 - 51702811
Alignment:
Q  121 atgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatgtacgggaacctccaccct 220  Q
    ||||||||| ||||| ||||||| | ||   ||||||| ||||||||| ||||||| ||||||||| ||||||||||||||| ||   |||||| ||| |    
T  51702695 atgagaggatgagaggaattaatctggatcattggatcaaaatcaacgtttcagatttaattgctctttaaaaagggtcatgcactacaacctctacctt 51702794  T
Q  221 ttctcttctccactctg 237  Q
    |  ||||||||||||||    
T  51702795 tcatcttctccactctg 51702811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 49648220 - 49648171
Alignment:
Q  156 atctaaatcaacgcttcagatataattgctcattaaaaagggtcatgtac 205  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||||||||    
T  49648220 atctaaatcaacgcttcagatttaattgcactttaaaaagggtcatgtac 49648171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 33114134 - 33114189
Alignment:
Q  140 taatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaag 195  Q
    ||||||||||  ||||||| ||||||||||||||||| ||||| ||| ||||||||    
T  33114134 taatatagaccattggatcaaaatcaacgcttcagatttaattactctttaaaaag 33114189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 50848409 - 50848449
Alignment:
Q  161 aatcaacgcttcagatataattgctcattaaaaagggtcat 201  Q
    |||||||||||||||| ||| ||||| ||||||||||||||    
T  50848409 aatcaacgcttcagatttaactgctctttaaaaagggtcat 50848449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 112 - 242
Target Start/End: Original strand, 30266341 - 30266471
Alignment:
Q  112 actttttaaatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatgtacgggaac 211  Q
    |||||||||||||||||  ||||| ||||||| ||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||||| || | |||    
T  30266341 actttttaaatgagagggtgagaggaattaatttagaccgttggatctaaatcaacacttcagatttaattgctctttaaaaagggtcatggactgtaac 30266440  T
Q  212 ctccaccctttctcttctccactctgttctt 242  Q
     |||||| ||||||||||||||||| |||||    
T  30266441 atccaccttttctcttctccactctcttctt 30266471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 97 - 242
Target Start/End: Original strand, 25616855 - 25617001
Alignment:
Q  97 attttaaataagatgactttttaaatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaa-g 195  Q
    |||| |||| ||| ||||||||||||||||||  ||||||||||||  ||||| ||||||| |||||||| ||||||||| |||||||||  |||||| |    
T  25616855 atttcaaatgagaggactttttaaatgagagggtgagagaaattaacttagaccgttggatttaaatcaaggcttcagatttaattgctctgtaaaaagg 25616954  T
Q  196 ggtcatgtacgggaacctccaccctttctcttctccactctgttctt 242  Q
    |||||||||  | ||||||||||  ||||||||||||||||||||||    
T  25616955 ggtcatgtattgtaacctccacctcttctcttctccactctgttctt 25617001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 45632432 - 45632359
Alignment:
Q  131 gagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatgta 204  Q
    ||||| ||||||| || || ||||||||||||||||||||| |||| ||||||| | |||||||||||||||||    
T  45632432 gagaggaattaatttaaaccgttggatctaaatcaacgctttagatttaattgcactttaaaaagggtcatgta 45632359  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 42847991 - 42848044
Alignment:
Q  152 ttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatgtac 205  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||| ||||||||    
T  42847991 ttggatctaaatcaacgcttcagatttaattgcactttaaaaaggatcatgtac 42848044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 42848660 - 42848592
Alignment:
Q  137 aattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatgtac 205  Q
    ||||||| | ||| |||| ||||||||||||||||||||| ||||||| | |||||||| |||||||||    
T  42848660 aattaatttggaccgttgaatctaaatcaacgcttcagatttaattgcactttaaaaagtgtcatgtac 42848592  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 1678362 - 1678281
Alignment:
Q  155 gatctaaatcaacgcttcagatataattgctcattaaaaagggtcatgtacgggaacctccaccctttctcttctccactct 236  Q
    |||| |||||||||||| | || ||||||||| ||||||||||||||| ||   |||||| ||| ||  |||||||||||||    
T  1678362 gatcaaaatcaacgctttaaatttaattgctctttaaaaagggtcatgcactacaacctctacctttcatcttctccactct 1678281  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 23732968 - 23732841
Alignment:
Q  112 actttttaaatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatg---tacggg 208  Q
    |||||||||||||||||  ||||| ||||||| ||||| ||| ||||||||||||| |||||||| |||||| || |||||||||||||||    || |     
T  23732968 actttttaaatgagagggtgagaggaattaatttagaccgttagatctaaatcaacacttcagatttaattgttctttaaaaagggtcatgcaccaccgt 23732869  T
Q  209 aacctccaccctttctcttctccactct 236  Q
    ||| |||||| |||||||||||||||||    
T  23732868 aacatccaccttttctcttctccactct 23732841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 19534781 - 19534689
Alignment:
Q  138 attaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatgtacgggaacctccaccctttctcttctc 230  Q
    |||||| ||||| ||||||||||||||||||  ||| ||  || ||||| ||||||||||||| |||  | |||||  |||||| ||||||||    
T  19534781 attaatttagactgttggatctaaatcaacggctcaaattaaaatgctctttaaaaagggtcaagtagtgcaacctatacccttcctcttctc 19534689  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 44495154 - 44495055
Alignment:
Q  114 tttttaaatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatgtacgggaacct 213  Q
    |||||||||||||||  ||||| ||||||| ||||| ||||||||||||||||||||||| || |||||| ||    ||||||||||| ||||| |||||    
T  44495154 tttttaaatgagagggtgagaggaattaatttagaccgttggatctaaatcaacgcttcaaatttaattggtc----aaaagggtcatttacggtaacct 44495059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 17872895 - 17872953
Alignment:
Q  189 taaaaagggtcatgtacgggaacctccaccctttctcttctc--cactctgttcttctc 245  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||||||||||||||    
T  17872895 taaaaagggtcatttacggtaacctccaccttttctcttctccacactctgttcttctc 17872953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 20105062 - 20105012
Alignment:
Q  152 ttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatg 202  Q
    ||||||| ||||||||||||||||| |||||| || |||||||||||||||    
T  20105062 ttggatcaaaatcaacgcttcagatttaattggtctttaaaaagggtcatg 20105012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 37915435 - 37915517
Alignment:
Q  120 aatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatg 202  Q
    |||||||||| ||||| ||||||| |||||  ||||||| ||||||||||||||||| |||||| || |||||||||||||||    
T  37915435 aatgagaggatgagaggaattaatctagaccattggatcaaaatcaacgcttcagatttaattgttctttaaaaagggtcatg 37915517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 53467311 - 53467194
Alignment:
Q  120 aatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatgtacgggaacctccaccc 219  Q
    |||||||||| ||||| ||||||| | ||   ||||||| |||||||||||||| || ||||||||| ||||||||||||||| ||   |||||| |||     
T  53467311 aatgagaggatgagaggaattaatctggatcattggatcaaaatcaacgcttcaaatttaattgctctttaaaaagggtcatgcactacaacctctacct 53467212  T
Q  220 tttctcttctccactctg 237  Q
    ||| ||||||||||||||    
T  53467211 tttatcttctccactctg 53467194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 1093210 - 1093281
Alignment:
Q  131 gagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatg 202  Q
    ||||| ||||||| ||||| |||||||||||||||||| ||||||| | ||||||| |||||||||||||||    
T  1093210 gagaggaattaatttagaccgttggatctaaatcaacgtttcagatgttattgctctttaaaaagggtcatg 1093281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 49308157 - 49308239
Alignment:
Q  120 aatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatg 202  Q
    |||||||||| ||||| ||||||| | ||   ||||||| ||||||||||||||||| ||||||||| |||||||||||||||    
T  49308157 aatgagaggatgagaggaattaatttggatcattggatcaaaatcaacgcttcagatttaattgctctttaaaaagggtcatg 49308239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 20111946 - 20111849
Alignment:
Q  97 attttaaataagatgactttttaaatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaa 194  Q
    |||| |||||||| ||||||| ||||||||||| ||||| ||||||| | ||  |||||||||||||| |||||||| || ||||| ||| |||||||    
T  20111946 atttcaaataagaggacttttaaaatgagaggatgagaggaattaattttgatcgttggatctaaatcgacgcttcaaatttaattactctttaaaaa 20111849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 50704365 - 50704294
Alignment:
Q  131 gagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatg 202  Q
    ||||| ||||||| | |||  ||||||| ||||||||||||||||| ||||||||  |||||||||||||||    
T  50704365 gagaggaattaatctggaccattggatcaaaatcaacgcttcagatttaattgctttttaaaaagggtcatg 50704294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 26250203 - 26250245
Alignment:
Q  160 aaatcaacgcttcagatataattgctcattaaaaagggtcatg 202  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  26250203 aaatcaacgcttcagatttaattgctctttaaaaagggtcatg 26250245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 36863930 - 36864022
Alignment:
Q  138 attaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatgtacgggaacctccaccctttctcttctc 230  Q
    |||||| ||||| ||||||||||||||||||  ||||||  || ||||| ||||||||||||| |||  | |||||  |||||| ||||||||    
T  36863930 attaatttagactgttggatctaaatcaacggctcagattaaaatgctctttaaaaagggtcaagtagtgcaacctatacccttcctcttctc 36864022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 46889353 - 46889434
Alignment:
Q  120 aatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcat 201  Q
    |||||||||  ||||| ||||||| ||||| ||| |||| |||||||| | |||||| |||||| || || |||||||||||    
T  46889353 aatgagagggtgagaggaattaatttagaccgttagatcaaaatcaacacctcagatttaattgttctttcaaaagggtcat 46889434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 9146091 - 9146172
Alignment:
Q  120 aatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcat 201  Q
    |||||||||| ||||| ||||||| | |||| ||||||| ||||||||||||||||| |||||| || ||||||||||||||    
T  9146091 aatgagaggatgagaggaattaatttggacatttggatcaaaatcaacgcttcagatttaattgttctttaaaaagggtcat 9146172  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 42745665 - 42745742
Alignment:
Q  124 agaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcat 201  Q
    |||||| ||||| ||||||| | ||| |||||||||||||||||||||||||| ||||||| | |||||||| |||||    
T  42745665 agaggatgagaggaattaatttggaccgttggatctaaatcaacgcttcagatttaattgcactttaaaaagtgtcat 42745742  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 12293490 - 12293577
Alignment:
Q  117 ttaaatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatgta 204  Q
    ||||||||||||| ||||||||||||| | ||   ||||||| ||||||||||||||||| |||||| || ||||||| | |||||||    
T  12293490 ttaaatgagaggatgagagaaattaatctggatcattggatcaaaatcaacgcttcagatttaattggtctttaaaaatgatcatgta 12293577  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 32577394 - 32577318
Alignment:
Q  120 aatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagg 196  Q
    |||||||||| ||||| ||||||| |  ||  ||||||| ||||||||||||||||| ||||||||| |||||||||    
T  32577394 aatgagaggatgagaggaattaatctgaaccattggatcaaaatcaacgcttcagatttaattgctctttaaaaagg 32577318  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 202
Target Start/End: Complemental strand, 12294299 - 12294213
Alignment:
Q  116 tttaaatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatg 202  Q
    |||||||||||||| ||||  ||||||| |  ||  ||||||| |||||||||||||| || ||||||||| ||||||||| |||||    
T  12294299 tttaaatgagaggatgagatgaattaatctgaaccattggatcaaaatcaacgcttcatatttaattgctctttaaaaaggatcatg 12294213  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 18970698 - 18970554
Alignment:
Q  97 attttaaataagatgactttttaaatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagg 196  Q
    |||| |||||||| ||||||| ||||||||||| ||||| ||||||| | ||  |||||||||||||| |||||||| || ||| | ||| |||||||||    
T  18970698 atttcaaataagaggacttttaaaatgagaggatgagaggaattaattttgatcgttggatctaaatcgacgcttcaaatttaactactctttaaaaagg 18970599  T
Q  197 g-tcatgtacgggaacctccaccctttctcttctccactctgttct 241  Q
    | |||||||| | |  ||||||| ||||| || |||||||||||||    
T  18970598 gttcatgtaccgtactctccaccttttct-ttttccactctgttct 18970554  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 210472 - 210356
Alignment:
Q  120 aatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatgtacgggaacctccaccc 219  Q
    |||||||||| || || ||||||| | |||  ||||||| |||||||||||| |||| ||||||||| ||||||||||||||| ||   |||||| |||     
T  210472 aatgagaggatgaaaggaattaatctggaccattggatcaaaatcaacgctttagatttaattgctctttaaaaagggtcatgcactacaacctctacct 210373  T
Q  220 tttctcttctccactct 236  Q
    ||  |||||||||||||    
T  210372 ttcatcttctccactct 210356  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 14098448 - 14098366
Alignment:
Q  120 aatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatg 202  Q
    |||||||||| || || ||||||| | |||  ||||| | ||||||||||||||||| ||||||||| |||||||||||||||    
T  14098448 aatgagaggatgacaggaattaatttggaccattggaacaaaatcaacgcttcagatttaattgctctttaaaaagggtcatg 14098366  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 41609534 - 41609616
Alignment:
Q  120 aatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatg 202  Q
    |||||||||| ||||| ||||||| |  ||  ||||||| |||||||||| |||||| ||||||||| |||||||||||||||    
T  41609534 aatgagaggatgagaggaattaatttgaaccattggatcaaaatcaacgcatcagatttaattgctctttaaaaagggtcatg 41609616  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 4427889 - 4427971
Alignment:
Q  111 gactttttaaatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaa 193  Q
    |||||||||||| |||||  ||||| ||||||| ||||| |||| ||||||||| || ||| | || ||||||||| ||||||    
T  4427889 gactttttaaattagagggtgagaggaattaatttagaccgttgaatctaaatcgacactttaaatttaattgctctttaaaa 4427971  T

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Target: scaffold0136 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 23751 - 23669
Alignment:
Q  120 aatgagaggaagagagaaattaatatagacagttggatctaaatcaacgcttcagatataattgctcattaaaaagggtcatg 202  Q
    |||||||||| ||||| ||||||||||||   ||||||| ||||||||||||||||| |||||  || ||||||||| |||||    
T  23751 aatgagaggatgagaggaattaatatagatcattggatcaaaatcaacgcttcagatttaattattctttaaaaaggatcatg 23669  T

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