View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_high_109 (Length: 252)
Name: NF3726_high_109
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_109 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 44988257 - 44988016
Alignment:
| Q |
11 |
agcaaaggcaacaattataggtcgacccttcttatccaatccttgaacatagatcttttcctgtgcaagatcatcagctatctctgaaggggatacagaa |
110 |
Q |
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| T |
44988257 |
agcaaaggcaacaattataggtcgacccttcttatccaatccttgaacatagatcttttcctgtgcaagatcatcagctatctctgaaggggatacagaa |
44988158 |
T |
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| Q |
111 |
ccacttggaacaaatgattttctccatttcatgtactttaggaacatagctgaagccttatctacatctaaatcacgagctctcaagaatcttctaatca |
210 |
Q |
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| T |
44988157 |
ccacttggaacaaatgattttctccatttcatgtactttaggaacatagctgaagccttatctacatctaaatcacgagctctcaagaatcttctaatca |
44988058 |
T |
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| Q |
211 |
tcaaatcatctacttcctacccatcatcaaggctcaaatcaa |
252 |
Q |
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| T |
44988057 |
tcaaatcatctacttcctacccatcatcaaggctcaaatcaa |
44988016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 40118928 - 40118815
Alignment:
| Q |
108 |
gaaccacttggaacaaatgattttctccatttcatgtactttaggaacatagctgaagccttatctacatctaaatcacgagctctcaagaatcttctaa |
207 |
Q |
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|||||| ||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||||||||| |
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| T |
40118928 |
gaaccatttggaacaaatgaatgtctccatttcaagtactttaggaacattgctgaagccttttccacatctaaatcacgagctcgtaagaatcttctaa |
40118829 |
T |
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| Q |
208 |
tcatcaaatcatct |
221 |
Q |
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| T |
40118828 |
tcatcaaatcatct |
40118815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 40123301 - 40123181
Alignment:
| Q |
108 |
gaaccacttggaacaaatgattttctccatttcatgtactttaggaacatagctgaagccttatctacatctaaatcacgagctctcaagaatcttctaa |
207 |
Q |
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|||||| ||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||| || ||||||||||||||||| | | |||||||| | |
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| T |
40123301 |
gaaccatttggaacaaatgaatgtctccatttcaagtactttaggaacattgctgaagccttctccacatctaaatcacgagcacgtagaaatcttctga |
40123202 |
T |
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| Q |
208 |
tcatcaaatcatctacttcct |
228 |
Q |
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| T |
40123201 |
tcatcaaatcatcttcttcct |
40123181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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