View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_high_110 (Length: 251)

Name: NF3726_high_110
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_high_110
NF3726_high_110
[»] chr5 (10 HSPs)
chr5 (17-251)||(39168956-39169193)
chr5 (109-251)||(40418387-40418529)
chr5 (109-233)||(3299640-3299767)
chr5 (109-233)||(3392533-3392660)
chr5 (112-233)||(38987827-38987948)
chr5 (112-233)||(39726546-39726667)
chr5 (109-233)||(39879942-39880066)
chr5 (112-219)||(1163564-1163674)
chr5 (112-219)||(1850065-1850175)
chr5 (61-163)||(39400042-39400144)
[»] chr4 (2 HSPs)
chr4 (112-233)||(25912130-25912251)
chr4 (96-238)||(44444596-44444735)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 39169193 - 39168956
Alignment:
Q  17 gagggtcttgtaaagtgttctctgatggcctcaccagatgaggggtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtctt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169193 gagggtcttgtaaagtgttctctgatggcctcaccagatgaggggtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtctt 39169094  T
Q  117 gttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaaca---acaattctaccattttcttcatcataactactcttggtaat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  39169093 gttgtagatcttttaaaaagagttgataatcagattcccacttaccctcaacaacaacaacaattctaccattttcttcatcataactactcttggtaat 39168994  T
Q  214 caaaattgcagcaggaaggtcgccattgatattggtgt 251  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39168993 caaaattgcagcaggaaggtcgccattgatattggtgt 39168956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 40418529 - 40418387
Alignment:
Q  109 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttg 208  Q
    |||||||||||||||||| || || ||||||||||||||||||||||||||||| | || | |||||| ||||||||| |||||  |||||||| |||||    
T  40418529 agtgtcttgttgtagatcattgaagaagagttgataatcagattcccacttatcatgaagagcaacaactctaccattctcttcggcataactaatcttg 40418430  T
Q  209 gtaatcaaaattgcagcaggaaggtcgccattgatattggtgt 251  Q
    || |||||||| ||||||||||||| |  |||||| |||||||    
T  40418429 gtgatcaaaatggcagcaggaaggttgatattgatgttggtgt 40418387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 3299767 - 3299640
Alignment:
Q  109 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactc 205  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||    |||||  |||||||| |     
T  3299767 agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaatt 3299668  T
Q  206 ttggtaatcaaaattgcagcaggaaggt 233  Q
    ||||| |||||||| |||||||||||||    
T  3299667 ttggtgatcaaaatggcagcaggaaggt 3299640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 3392660 - 3392533
Alignment:
Q  109 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactc 205  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||    |||||  |||||||| |     
T  3392660 agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaatt 3392561  T
Q  206 ttggtaatcaaaattgcagcaggaaggt 233  Q
    ||||| |||||||| |||||||||||||    
T  3392560 ttggtgatcaaaatggcagcaggaaggt 3392533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 112 - 233
Target Start/End: Complemental strand, 38987948 - 38987827
Alignment:
Q  112 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggta 211  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| |||||||||  ||||  |||||||| ||||| |     
T  38987948 gtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctg 38987849  T
Q  212 atcaaaattgcagcaggaaggt 233  Q
    |||||||| |||||||||||||    
T  38987848 atcaaaatggcagcaggaaggt 38987827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 112 - 233
Target Start/End: Complemental strand, 39726667 - 39726546
Alignment:
Q  112 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggta 211  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| |||||||||  ||||  |||||||| ||||| |     
T  39726667 gtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctg 39726568  T
Q  212 atcaaaattgcagcaggaaggt 233  Q
    |||||||| |||||||||||||    
T  39726567 atcaaaatggcagcaggaaggt 39726546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 39880066 - 39879942
Alignment:
Q  109 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttg 208  Q
    ||||| |||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| |||||||||  ||||  |||||||| |||||    
T  39880066 agtgttttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttg 39879967  T
Q  209 gtaatcaaaattgcagcaggaaggt 233  Q
     | |||||||| |||||||||||||    
T  39879966 ctgatcaaaatggcagcaggaaggt 39879942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 1163564 - 1163674
Alignment:
Q  112 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactcttg 208  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||  ||||| |||||||||    |||| | || ||||| |||||    
T  1163564 gtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaatcttg 1163663  T
Q  209 gtaatcaaaat 219  Q
    |||||||||||    
T  1163664 gtaatcaaaat 1163674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 1850175 - 1850065
Alignment:
Q  112 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactcttg 208  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||  || || |||||||||    |||| | || ||||| |||||    
T  1850175 gtcttgttgtaaatcttttaagaagagttgataatcagattcccacttatcctgaacaggaataactctaccattctcctctttagcaaaactaatcttg 1850076  T
Q  209 gtaatcaaaat 219  Q
    |||||||||||    
T  1850075 gtaatcaaaat 1850065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 163
Target Start/End: Complemental strand, 39400144 - 39400042
Alignment:
Q  61 gtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtcttgttgtagatcttttaaaaagagttgataatcagattcccactta 160  Q
    ||||| || |||||| ||||||||||||||| |  ||||||||||| ||| | |||||  |||||||| ||| ||||||||||||||||||| |||||||    
T  39400144 gtggttgggttgatttcggtacattgctgctgcgttgaaggtgagatgagggccttgtcttagatcttctaagaagagttgataatcagattgccactta 39400045  T
Q  161 tcc 163  Q
    |||    
T  39400044 tcc 39400042  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 25912130 - 25912251
Alignment:
Q  112 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggta 211  Q
    |||||| |||||||  ||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||  |||||||| |||||||     
T  25912130 gtcttgctgtagataatttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcttcggcataactaatcttggtg 25912229  T
Q  212 atcaaaattgcagcaggaaggt 233  Q
    |||||||| |||||| ||||||    
T  25912230 atcaaaatggcagcatgaaggt 25912251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 44444596 - 44444735
Alignment:
Q  96 tgaaggtgagacgagtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatc 195  Q
    ||||||||||| ||| | |||||| ||||| |||||| || |||| ||||||||||||| | ||||||| ||||||||| ||     |||| ||||||||    
T  44444596 tgaaggtgagatgagcggcttgttttagatattttaagaaaagtttataatcagattccaatttatcctgaacaacaactatgt---cattctcttcatc 44444692  T
Q  196 ataactactcttggtaatcaaaattgcagcaggaaggtcgcca 238  Q
     |||||| | ||||||||||||||||||||| |||||||||||    
T  44444693 gtaactagtattggtaatcaaaattgcagcacgaaggtcgcca 44444735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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