View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_high_112 (Length: 251)
Name: NF3726_high_112
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_112 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 35094100 - 35093866
Alignment:
| Q |
1 |
ttacaatttccgaaaaaagatctaaatgttaaaaaatgtattgtatattttcctcacttttttccttttacaactaataagacttatataggcaatgaga |
100 |
Q |
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| T |
35094100 |
ttacaatttccgaaaaaagatctaaatgttaaaaaatgtattgtatattttcctcacatttttccttttacaactaataagacttatataggcaatgaga |
35094001 |
T |
|
| Q |
101 |
gcaactaactagtgtaactaacttttacatctaatacaggataccattctataggacaggaaagccttgactggccaagcaggttgaagatagtgaaagg |
200 |
Q |
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| T |
35094000 |
gcaactaactagtgtaactaacttttacatctaatacaggataccattctataggacaggaaagccttgactggccaagcaggttgaagatagtgaaagg |
35093901 |
T |
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| Q |
201 |
tgtagcgaaagggattgaatatctatacaaggagt |
235 |
Q |
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| T |
35093900 |
tgtagcgaaagggattgaatatctatacaaggagt |
35093866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 34239772 - 34239714
Alignment:
| Q |
76 |
aataagacttatataggcaatgagagcaactaactagtgtaactaacttttacatctaa |
134 |
Q |
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| T |
34239772 |
aataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatctaa |
34239714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 40620 - 40563
Alignment:
| Q |
76 |
aataagacttatataggcaatgagagcaactaactagtgtaactaacttttacatcta |
133 |
Q |
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|||||| ||||||||| |||| ||| ||||||||||||||||| ||||||||||||| |
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| T |
40620 |
aataaggcttatatagtcaattagattaactaactagtgtaacttacttttacatcta |
40563 |
T |
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