View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_high_113 (Length: 250)

Name: NF3726_high_113
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_high_113
NF3726_high_113
[»] chr4 (1 HSPs)
chr4 (135-235)||(10634239-10634339)
[»] chr5 (1 HSPs)
chr5 (8-71)||(17205597-17205660)
[»] chr1 (5 HSPs)
chr1 (38-237)||(29718792-29718994)
chr1 (130-237)||(29658765-29658872)
chr1 (130-237)||(29691280-29691387)
chr1 (130-237)||(33160696-33160803)
chr1 (135-205)||(30827304-30827374)
[»] chr6 (1 HSPs)
chr6 (141-235)||(6594411-6594505)


Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 10634339 - 10634239
Alignment:
Q  135 caatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaagagact 234  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||||| || ||||| |||||||| |||||||| ||||| |||||||||||||||||    
T  10634339 caataactcaaatccagcacgtccaagttgggaaaaatggaagtaaacaacatgatgtgttcatctcccaacagctcacagtgagccaaacaaagagact 10634240  T
Q  235 t 235  Q
    |    
T  10634239 t 10634239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 17205597 - 17205660
Alignment:
Q  8 aagcataggaaaacactttgagatgagacagagtgatttatcatcaacatctgtgtatgacaag 71  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  17205597 aagcataggaaaacacttttagatgatacagagtgatttatcatcaacatctgtgtatgacaag 17205660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 237
Target Start/End: Complemental strand, 29718994 - 29718792
Alignment:
Q  38 gagtgatttatcatcaacatctgtgtatgacaagttcatatgcttaagattatgaca---tcttaatactagaccaacaatttcctcacacatgcccttc 134  Q
    |||||||||||||||||| |  || ||||||||||||| ||||||||  |||  |||   |||||| |||  |  |||| |||| ||| |||   |||||    
T  29718994 gagtgatttatcatcaacgttggtatatgacaagttcaaatgcttaatcttagtacaacatcttaaaactttagaaacagtttcttcagacacttccttc 29718895  T
Q  135 caatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaagagact 234  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||  |  ||||||| |||||||||    | ||||  |||||||||||||||||    
T  29718894 caatagctcaaatcaagcacctccaagttggggaaaatggaagcaaacaatataatgttttgatctctcaagtattgacagcgagccaaacaaagagact 29718795  T
Q  235 tta 237  Q
    |||    
T  29718794 tta 29718792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 29658872 - 29658765
Alignment:
Q  130 ccttccaatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaag 229  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||| |||||  | |||||||| |||||||||    | ||||  ||||||||||||    
T  29658872 ccttccaatagctcaaatcaagcacttccaagttggggaaaatggaagcaaacaatatgatgttttgatctctcaagtattgacagcgagccaaacaaag 29658773  T
Q  230 agacttta 237  Q
    ||||||||    
T  29658772 agacttta 29658765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 29691387 - 29691280
Alignment:
Q  130 ccttccaatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaag 229  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||  |  ||||||| |||||||||    | ||||  ||||||||||||    
T  29691387 ccttccaatagctcaaatcaagcacctccaagttggggaaaatggaagcaaacaatataatgttttgatctctcaagtattgacagcgagccaaacaaag 29691288  T
Q  230 agacttta 237  Q
    ||||||||    
T  29691287 agacttta 29691280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 33160696 - 33160803
Alignment:
Q  130 ccttccaatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaag 229  Q
    ||||| ||||||||||||| ||||||||||| |||||||| ||| ||| |||||  | ||||||||||||||||||  ||| |||||  |||||| ||||    
T  33160696 ccttcgaatagctcaaatcaagcacctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaag 33160795  T
Q  230 agacttta 237  Q
    ||||||||    
T  33160796 agacttta 33160803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 30827304 - 30827374
Alignment:
Q  135 caatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaa 205  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||  | ||||||||||||||||||    
T  30827304 caatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctctcaa 30827374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 6594505 - 6594411
Alignment:
Q  141 ctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaagagactt 235  Q
    |||||||| |||| ||||||  |||||||||| |||| |||||  | ||||||||||||| ||||  ||| ||||  ||||||||||||||||||    
T  6594505 ctcaaatcaagcagctccaaagtggggaaaatagaagcaaacaatatgatgttttcatctttcaagtgctcacagcgagccaaacaaagagactt 6594411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University