View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_high_127 (Length: 241)
Name: NF3726_high_127
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_127 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 49267211 - 49267008
Alignment:
| Q |
17 |
cacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacagagt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49267211 |
cacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattgaaataatttgtagaaaatattgtgacagagt |
49267112 |
T |
|
| Q |
117 |
gacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaaccaccttctctgtctttctct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49267111 |
gacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaatcaccttctctgtctttctct |
49267012 |
T |
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| Q |
217 |
aaca |
220 |
Q |
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|||| |
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| T |
49267011 |
aaca |
49267008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 49254949 - 49254743
Alignment:
| Q |
17 |
cacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacagagt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49254949 |
cacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagt |
49254850 |
T |
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| Q |
117 |
gacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaac---caccttctctgtctttc |
213 |
Q |
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|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
49254849 |
tacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaaccagcaccctctctgtctttc |
49254750 |
T |
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| Q |
214 |
tctaaca |
220 |
Q |
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||||||| |
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| T |
49254749 |
tctaaca |
49254743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 49271614 - 49271447
Alignment:
| Q |
20 |
agagagagatagcaatagctgtgctagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacagagtgac |
119 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
49271614 |
agagagagatagcaatagctgtggtagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttac |
49271515 |
T |
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| Q |
120 |
ggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgc |
187 |
Q |
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|||||||||| ||||||||||| |||||||| |||||||||| ||| |||||||||| ||||| |
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| T |
49271514 |
actaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgc |
49271447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 49274640 - 49274761
Alignment:
| Q |
30 |
agcaatagctgtgctagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacagagtgacggcgatcata |
129 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |
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| T |
49274640 |
agcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactagtcata |
49274739 |
T |
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| Q |
130 |
ggcagagctagaaaacaaacat |
151 |
Q |
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|||| ||||||||||| ||||| |
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| T |
49274740 |
ggcaaagctagaaaaccaacat |
49274761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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