View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3726_high_133 (Length: 238)
Name: NF3726_high_133
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_133 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49705138 - 49704916
Alignment:
| Q |
1 |
ccaaagaatcctcctcttagtctcacacccaattagtccaattccaaaacacactctttctcacaagtatattagatctccaaaagtaaaacactcaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49705138 |
ccaaagaatcctcctcttagtctcacacccaattagtccaattccaaaacacactctttctcacaagtatattagatctccaaaagtaaaacactcaaaa |
49705039 |
T |
|
| Q |
101 |
gggcacacacatcaatacaaaagcacttattccacacagtaagtacttatttgcacacagactctgatt-ttttcccaacttgatctgcattcatcacaa |
199 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
49705038 |
gggcacacacatcaatacaaaagtgcttattccacacagtaagtacttatttgcacacaaactctgatttttttcccaacttgatctgcattcatcacaa |
49704939 |
T |
|
| Q |
200 |
acaaagttgtcatatcagaattg |
222 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
49704938 |
acaaagttgtcatatcagaattg |
49704916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University