View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_high_140 (Length: 227)

Name: NF3726_high_140
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_high_140
NF3726_high_140
[»] chr5 (2 HSPs)
chr5 (13-219)||(5476103-5476310)
chr5 (124-208)||(28497471-28497554)
[»] chr8 (1 HSPs)
chr8 (133-214)||(8766664-8766749)
[»] chr2 (3 HSPs)
chr2 (124-187)||(16576761-16576824)
chr2 (142-199)||(15185937-15185994)
chr2 (127-171)||(36184641-36184685)
[»] chr7 (5 HSPs)
chr7 (119-185)||(37575480-37575546)
chr7 (143-184)||(4225729-4225770)
chr7 (127-170)||(30973183-30973226)
chr7 (133-185)||(14967537-14967589)
chr7 (133-185)||(15397013-15397065)
[»] chr1 (2 HSPs)
chr1 (126-168)||(47350505-47350547)
chr1 (109-180)||(10122922-10122993)
[»] chr4 (3 HSPs)
chr4 (143-183)||(35008637-35008677)
chr4 (128-201)||(1806271-1806344)
chr4 (134-214)||(39721509-39721589)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 5476103 - 5476310
Alignment:
Q  13 caaagggaattcctcaaataactatagacaa-ctactcaaggacggatccatgattaattttttatgtggctaaaataatagtgtaannnnnnnnaccca 111  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||        | |||    
T  5476103 caaagggaattcctcaaataactatagacaaactactcaaggacggatccatgattaattttttatgtggctaaaataatagtgtaattttttttatcca 5476202  T
Q  112 atgaaacttaaaactatgtaatatttcactcaaaataatagttttagtagttttatttgaactagttttattagatcatgttcatttgtagtcctaataa 211  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5476203 atgaaattaaaaactatgtaatatttcactcaaaataatagttttagtagttttatttgaactagttttattagatcatgttcatttgtagtcctaataa 5476302  T
Q  212 ttgatgat 219  Q
    ||| ||||    
T  5476303 ttgctgat 5476310  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 28497471 - 28497554
Alignment:
Q  124 actatgtaatatttcactcaaaataatagttttagtagttttatttgaactagttttattagatcatgttcatttgtagtcctaa 208  Q
    |||||||| ||||||||||| || || |||| |||||||||||||||   | |||||||||| |||||| |||||||| ||||||    
T  28497471 actatgtattatttcactcataa-aacagttctagtagttttatttggtttggttttattagctcatgtccatttgtaatcctaa 28497554  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 8766749 - 8766664
Alignment:
Q  133 tatttcactcaaaataatagttttagtagttttatttg----aactagttttattagatcatgttcatttgtagtcctaataattg 214  Q
    ||||||||| ||||||||||||||||||||||||||||    |||||||||||||||  || ||||||||||| |||||| |||||    
T  8766749 tatttcactgaaaataatagttttagtagttttatttgggctaactagttttattagtacaagttcatttgtaatcctaacaattg 8766664  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 16576824 - 16576761
Alignment:
Q  124 actatgtaatatttcactcaaaataatagttttagtagttttatttgaactagttttattagat 187  Q
    |||||||| |||||||| |||| || ||||||||||||||||||||| |||| |||||||||||    
T  16576824 actatgtactatttcacacaaagtattagttttagtagttttatttggactaattttattagat 16576761  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 15185994 - 15185937
Alignment:
Q  142 caaaataatagttttagtagttttatttgaactagttttattagatcatgttcatttg 199  Q
    |||||||||||||||||||||||||||| |  |||||||||||| |||  ||||||||    
T  15185994 caaaataatagttttagtagttttatttaagttagttttattagctcaaattcatttg 15185937  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 36184685 - 36184641
Alignment:
Q  127 atgtaatatttcactcaaaataatagttttagtagttttatttga 171  Q
    ||||| ||||||||  ||||||||||||||||||||||| |||||    
T  36184685 atgtactatttcacataaaataatagttttagtagttttgtttga 36184641  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 37575480 - 37575546
Alignment:
Q  119 ttaaaactatgtaatatttcactcaaaataatagttttagtagttttatttgaactagttttattag 185  Q
    |||| ||| |||| ||||||||  |||||||||||||||||||||||||||  ||||||||||||||    
T  37575480 ttaagactttgtactatttcacctaaaataatagttttagtagttttatttagactagttttattag 37575546  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 4225770 - 4225729
Alignment:
Q  143 aaaataatagttttagtagttttatttgaactagttttatta 184  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  4225770 aaaataatagttttagtagttttatttgagctaattttatta 4225729  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 30973226 - 30973183
Alignment:
Q  127 atgtaatatttcactcaaaataatagttttagtagttttatttg 170  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||    
T  30973226 atgtactatttcactcaaagtaatagttttagtagtattatttg 30973183  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 14967589 - 14967537
Alignment:
Q  133 tatttcactcaaaataatagttttagtagttttatttgaactagttttattag 185  Q
    |||||||| |||||||| ||||||| ||  ||||||| |||||||||||||||    
T  14967589 tatttcacccaaaataacagttttaatatgtttatttcaactagttttattag 14967537  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 15397065 - 15397013
Alignment:
Q  133 tatttcactcaaaataatagttttagtagttttatttgaactagttttattag 185  Q
    |||||||| |||||||| ||||||| ||  ||||||| |||||||||||||||    
T  15397065 tatttcacccaaaataacagttttaatatgtttatttcaactagttttattag 15397013  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 47350505 - 47350547
Alignment:
Q  126 tatgtaatatttcactcaaaataatagttttagtagttttatt 168  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  47350505 tatgtaatatttcacccaaaataatagttttagtagttttatt 47350547  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 10122922 - 10122993
Alignment:
Q  109 ccaatgaaacttaaaactatgtaatatttcactcaaaataatagttttagtagttttatttgaactagtttt 180  Q
    ||||| ||| |||| | |||||| |||||||  |||||||||||| ||||||| ||||||||| ||||||||    
T  10122922 ccaataaaatttaatattatgtattatttcatccaaaataatagtcttagtagatttatttgagctagtttt 10122993  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 35008637 - 35008677
Alignment:
Q  143 aaaataatagttttagtagttttatttgaactagttttatt 183  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  35008637 aaaataattgttttggtagttttatttgaactagttttatt 35008677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 1806344 - 1806271
Alignment:
Q  128 tgtaatatttcactcaaaataatagttttagtagttttatttgaactagttttattagatcatgttcatttgta 201  Q
    |||| ||||||||  ||||||| |||| |||||||||| ||||  ||| ||||||||| ||| |||||||||||    
T  1806344 tgtactatttcacctaaaataacagttgtagtagttttgtttggtctaattttattagttcaagttcatttgta 1806271  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 39721509 - 39721589
Alignment:
Q  134 atttcactcaaaataatagttttagtagttttatttgaactagttttattagatcatgttcatttgtagtcctaataattg 214  Q
    ||||||| |||| ||| | | ||||||||||||||||  ||| ||||||||| ||| |||||||||||  ||||| |||||    
T  39721509 atttcacccaaagtaacaatgttagtagttttatttgggctatttttattagttcaagttcatttgtaaccctaacaattg 39721589  T

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