View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3726_high_147 (Length: 212)
Name: NF3726_high_147
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_147 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 52512559 - 52512348
Alignment:
| Q |
1 |
tcatcaatggacaagtgatgttgctgccgaagagagctgcttaaacagcaaacagttcaatcataacaacaacttagattcagagttttccaagaatagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52512559 |
tcatcaatggacaagtgatgttgctgccgaagagagctgcttaaacagcaaacagttcaatcataacaacaacttagattcagagttttccaagaatagt |
52512460 |
T |
|
| Q |
101 |
actataaaggaagagatctcatttgctaatttccccaaattcactgaaatgcttaattacactgctcctaattccagcatggaatgttatcgaatacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52512459 |
actataaaggaagagatctcatttgctaatttccccaaattcactgaaatgcttaattacactgctcctaattccagcatggaatgttatcgaatacttg |
52512360 |
T |
|
| Q |
201 |
atccttccacaa |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
52512359 |
atccttccacaa |
52512348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University