View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_high_15 (Length: 499)
Name: NF3726_high_15
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 12 - 483
Target Start/End: Complemental strand, 39084530 - 39084059
Alignment:
| Q |
12 |
acagaatttggtatatgcagaaaaggatctaagttacacctaagatacacacatgcaaatgcaattaaacaagaaccatactcattaacataatttctac |
111 |
Q |
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| T |
39084530 |
acagaatttggtatatgcagaaaaggatctaagttacacctaagatacacacatgcaaatgcaattaaacaagaaccatactcattaacataatttctac |
39084431 |
T |
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| Q |
112 |
acataataatacccaacattaatccacaatatttatttaactactaaccaaaactaaaataactataccactaaaaactcttgaggaacaaccaatgagt |
211 |
Q |
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| T |
39084430 |
acataataatacccaacattaatccacaatatttatttaactactaaccaaaactaaaataactataccactaaaaactcttgaggaacaaccaatgagt |
39084331 |
T |
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| Q |
212 |
atgttttttctcaatattcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaataatctggtctcccttccatt |
311 |
Q |
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| T |
39084330 |
atgttttttctcaatattcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaataatctggtctcccttccatt |
39084231 |
T |
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| Q |
312 |
atttccggcaaattctccgaaaaatcatgtctctctcccttctcctccatcacctcttcctttctctgaggctccacaatttcactgttatgacataaac |
411 |
Q |
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| T |
39084230 |
atttccggcaaattctccgaaaaatcatgtctctctcccttctcctccatcacctcttcctttctctgaggttccacaatttcactgttatgacataaac |
39084131 |
T |
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| Q |
412 |
tactaaaccaaggaagaaacttagaagaacacaaaacataattagaattcagaatagaattaaccatcaaaa |
483 |
Q |
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| T |
39084130 |
tactaaaccaaggaagaaacttagaagaacacaaaacataattagaattcagaatagaattaaccatcaaaa |
39084059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 44729752 - 44729815
Alignment:
| Q |
228 |
ttcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaat |
291 |
Q |
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| T |
44729752 |
ttcttttccttaattgtatccaagctaggcttccaccctttccctgataattgcctactcaaat |
44729815 |
T |
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