View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_high_19 (Length: 472)

Name: NF3726_high_19
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_high_19
NF3726_high_19
[»] chr4 (18 HSPs)
chr4 (2-457)||(26192302-26192757)
chr4 (103-358)||(26176214-26176469)
chr4 (7-339)||(26180028-26180361)
chr4 (7-324)||(26162231-26162548)
chr4 (8-298)||(25929249-25929539)
chr4 (2-107)||(26175330-26175435)
chr4 (7-321)||(25648361-25648675)
chr4 (392-457)||(26176558-26176623)
chr4 (392-457)||(26192779-26192844)
chr4 (392-457)||(26192866-26192931)
chr4 (388-457)||(26162957-26163026)
chr4 (389-457)||(26162817-26162885)
chr4 (389-457)||(26163240-26163308)
chr4 (395-449)||(26176474-26176528)
chr4 (392-450)||(26192953-26193011)
chr4 (388-457)||(26163380-26163449)
chr4 (389-457)||(26163663-26163731)
chr4 (389-450)||(26163099-26163160)
[»] chr6 (1 HSPs)
chr6 (95-292)||(32189237-32189434)


Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 2 - 457
Target Start/End: Original strand, 26192302 - 26192757
Alignment:
Q  2 acgtttgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttccccttcgcactctt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26192302 acgtttgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttccccttcgcactctt 26192401  T
Q  102 caagtgctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgtgacatcgagaaaggaatggagtc 201  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26192402 caagtgctcctctcatggatttggcttgaggagattcttcagggattgaaaagagttgaagaatacttgggagttgtgacatcgagaaaggaatggagtc 26192501  T
Q  202 ggcctcnnnnnnngagaggtaaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaatatcctgtc 301  Q
    ||||||       |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  26192502 ggcctctttttttgagaggtatggagaaacttcttggaccggaaattggagggtcattacatttccaacgtgaagatcatcaaaactgaaatatcctgtc 26192601  T
Q  302 ttgaaagcttctgtatgatccaaattaggaattgggagatcttctacggagttggtagatgggaggccttttggatcaatgacatatttgtacccagtaa 401  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26192602 ttgaaagcttctgtatgatccaagttaggaattgggagatcttctacggagttggtagatgggaggccttttggatcaatgacatatttgtacccagaaa 26192701  T
Q  402 tgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattg 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26192702 tgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattg 26192757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 103 - 358
Target Start/End: Original strand, 26176214 - 26176469
Alignment:
Q  103 aagtgctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgtgacatcgagaaaggaatggagtcg 202  Q
    ||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26176214 aagtgctcctctcatggatttggtttgaagagattctttagggattgaaaagagttgaagaatacttgggagttgtgacatcgagaaaggaatggagttg 26176313  T
Q  203 gcctcnnnnnnngagaggtaaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaatatcctgtct 302  Q
    |||||       ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  26176314 gcctctttttttgagaggtaaggagaaacttcttggaccggaaattggaaggtcattacatttccaacgtgaagatcatccaaactaaaatatcctgtct 26176413  T
Q  303 tgaaagcttctgtatgatccaaattaggaattgggagatcttctacggagttggta 358  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  26176414 tgaaagcttctgtatgatccaagttaggaattgggagatcttctgcggagttggta 26176469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 339
Target Start/End: Original strand, 26180028 - 26180361
Alignment:
Q  7 tgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttccccttcgcactcttcaagt 106  Q
    ||||||||  || |||| ||||||||||||||||||||||||||| ||||||||  | |||||||||||||||| |||||||  ||| |||||| |||||    
T  26180028 tgaaccaaagatcgtgttaacaaattcgagcatggactctagagagttggcacaagtctttgtctcccctgtaatggtttccgattcacactctccaagt 26180127  T
Q  107 gctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgtgacatcgagaaaggaatggagtcggcct 206  Q
    |    | |||||||||| |||||||||||  ||||||||||||| ||||||||||||| |||||| ||||||||||| |  | |||||||||||| ||||    
T  26180128 gaatttatcatggatttagcttgaggagaatcttcagggattgataagagttgaagaacacttggaagttgtgacattgcaagaggaatggagtcagcct 26180227  T
Q  207 cnnnnnnngagaggtaaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaatatcctgtcttgaa 306  Q
    |       |||||  ||||||||||  ||||||| |||||||| |||||||||||||||||||  | ||||||||||||| ||||| |||||  ||||||    
T  26180228 ctttttttgagagaaaaggagaaaccacttggacgggaaattgaagggtcattacatttccaacataaagatcatccaaattgaaaaatcctaccttgaa 26180327  T
Q  307 agcttctgtatgatccaaattagga-attgggag 339  Q
    |||||||||| ||||||| |||||| ||||||||    
T  26180328 agcttctgtacgatccaagttaggagattgggag 26180361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 7 - 324
Target Start/End: Original strand, 26162231 - 26162548
Alignment:
Q  7 tgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttccccttcgcactcttcaagt 106  Q
    ||||||||| || ||||||||||||||||||||||||||||| || ||  ||||  | |||||||||||||||| ||||||| |||| |||| |||||||    
T  26162231 tgaaccaatgatcgtgtcaacaaattcgagcatggactctagggagtttacacaagtctttgtctcccctgtaatggtttccgcttcacactgttcaagt 26162330  T
Q  107 gctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgtgacatcgagaaaggaatggagtcggcct 206  Q
    | ||||  ||||||||| |||||||||||  ||||||||||||| || ||||||| || |||||||||||||||||| | || |||||| ||||| ||||    
T  26162331 gatcctaacatggatttagcttgaggagaatcttcagggattgagaaaagttgaaaaacacttgggagttgtgacattgcgagaggaattgagtcagcct 26162430  T
Q  207 cnnnnnnngagaggtaaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaatatcctgtcttgaa 306  Q
    |       |||||| || | ||||  |||||||  |||||||| |||||||||||||||||||  | ||||||||||||| ||||| |||||  ||||||    
T  26162431 ctttttttgagaggaaacgtgaaatctcttggatgggaaattgaagggtcattacatttccaacataaagatcatccaaattgaaaaatcctaccttgaa 26162530  T
Q  307 agcttctgtatgatccaa 324  Q
    |||||||||  |||||||    
T  26162531 agcttctgtgcgatccaa 26162548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 25929249 - 25929539
Alignment:
Q  8 gaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttccccttcgcactcttcaagtg 107  Q
    |||||||| ||| ||||||||||||| ||||||||||||| ||| ||||||||| | || | ||||||||| |||| |||  |||  || |  |||||||    
T  25929249 gaaccaattattttgtcaacaaattcaagcatggactctatagagttggcacaggtcttggactcccctgtgacgggttctgcttgacattgctcaagtg 25929348  T
Q  108 ctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgtgacatcgagaaaggaatggagtcggcctc 207  Q
     | ||||||| ||||| |||||||||||  |||| |||||||||| |||||  |||| ||||||||||||||| || |||| |||||| ||||| |||||    
T  25929349 tttctctcattgattttgcttgaggagagtcttcggggattgaaaggagttcgagaacacttgggagttgtgaaattgagagaggaattgagtcagcctc 25929448  T
Q  208 nnnnnnngagaggtaaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaatatcct 298  Q
           || ||| ||  |||||  |||||||  ||||||||||||||||||||||||||||  ||||||||||||||| ||||| |||||    
T  25929449 ttttctcgaaaggaaattagaaatctcttggattggaaattggagggtcattacatttccaacatgaagatcatccaaattgaaaaatcct 25929539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 26175330 - 26175435
Alignment:
Q  2 acgtttgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttccccttcgcactctt 101  Q
    |||||| ||| ||||||||||||||||||||| ||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26175330 acgtttaaactaataattgtgtcaacaaattcaagcatgggctcttaagaattggcacagatctttgtctcccctgtaacggtttccccttcgcactctt 26175429  T
Q  102 caagtg 107  Q
    ||||||    
T  26175430 caagtg 26175435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 321
Target Start/End: Complemental strand, 25648675 - 25648361
Alignment:
Q  7 tgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttccccttcgcactcttcaagt 106  Q
    ||||||||| ||||||||||||||||  ||||| |||||||  || ||| |||| ||  | ||||||||| | ||  | ||  |||| || | |||||||    
T  25648675 tgaaccaattattgtgtcaacaaatttaagcatagactctacggagttgacacacatcctggtctcccctctgactctgtcagcttcacaatgttcaagt 25648576  T
Q  107 gctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgtgacatcgagaaaggaatggagtcggcct 206  Q
    | |  |||||| ||||||||||| |||||  ||| ||||||||| ||||| || ||||  |||| ||||| ||| |  ||||||||||| ||||  ||||    
T  25648575 gtttttctcatagatttggcttgtggagaatcttgagggattgacaagagatgtagaacccttgtgagttatgagagtgagaaaggaattgagttagcct 25648476  T
Q  207 cnnnnnnngagaggtaaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaatatcctgtcttgaa 306  Q
    |       || ||| |  ||| ||||| |||||||||||||||||||| ||||||||||||||  |||||||||||||||| |||| | |||  ||||||    
T  25648475 cctttttcgaaaggaattgaggaactttttggaccggaaattggagggccattacatttccaacatgaagatcatccaaaccgaaaaagcctaacttgaa 25648376  T
Q  307 agcttctgtatgatc 321  Q
    ||||||||| |||||    
T  25648375 agcttctgtgtgatc 25648361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 392 - 457
Target Start/End: Original strand, 26176558 - 26176623
Alignment:
Q  392 tacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattg 457  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26176558 tacccggtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattg 26176623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 392 - 457
Target Start/End: Original strand, 26192779 - 26192844
Alignment:
Q  392 tacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattg 457  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26192779 tacccggtaatgtaatttagttgcttggtttcatgtttaccatattgagttatgtaaggaccattg 26192844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 392 - 457
Target Start/End: Original strand, 26192866 - 26192931
Alignment:
Q  392 tacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattg 457  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26192866 tacccggtaatgtaattttgttgcttggtttcatgtttaccatattgagttatgtaaggaccattg 26192931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 388 - 457
Target Start/End: Original strand, 26162957 - 26163026
Alignment:
Q  388 tttgtacccagtaatgtaat-ttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattg 457  Q
    ||||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||| ||||||    
T  26162957 tttgtacccagtagtgtaatcttggtt-cttggcttcatgtttaccatattgagttatgtaaggtccattg 26163026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 389 - 457
Target Start/End: Original strand, 26162817 - 26162885
Alignment:
Q  389 ttgtacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattg 457  Q
    |||||||| ||| |||||| ||| | ||||| |||||||||||||||||||||||||||||| ||||||    
T  26162817 ttgtacccggtagtgtaatctgggttcttggcttcatgtttaccatattgagttatgtaaggtccattg 26162885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 457
Target Start/End: Original strand, 26163240 - 26163308
Alignment:
Q  389 ttgtacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattg 457  Q
    |||||||| ||| |||||| ||| | ||||  |||||||||||||||||||||||||||||| ||||||    
T  26163240 ttgtacccggtagtgtaatctgggttcttgtcttcatgtttaccatattgagttatgtaaggtccattg 26163308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 449
Target Start/End: Original strand, 26176474 - 26176528
Alignment:
Q  395 ccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaag 449  Q
    ||||||||||||||||||||||||  |||||||||| |||||  |||||||||||    
T  26176474 ccagtaatgtaatttggttgcttgccttcatgtttatcatatgaagttatgtaag 26176528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 450
Target Start/End: Original strand, 26192953 - 26193011
Alignment:
Q  392 tacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaagg 450  Q
    |||||||||||||||||| |||  |||| ||||||||||||||||  ||||||||||||    
T  26192953 tacccagtaatgtaatttagttaattggcttcatgtttaccatatccagttatgtaagg 26193011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 457
Target Start/End: Original strand, 26163380 - 26163449
Alignment:
Q  388 tttgtacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattg 457  Q
    ||||||||| ||| |||||| ||  | ||||| | |||||||||||||||||||||||||||| ||||||    
T  26163380 tttgtacccggtagtgtaatctgcgtccttggctacatgtttaccatattgagttatgtaaggtccattg 26163449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 457
Target Start/End: Original strand, 26163663 - 26163731
Alignment:
Q  389 ttgtacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattg 457  Q
    |||||||| ||| |||||  ||| | ||||| ||||||||||| |||||||||||||||||| ||||||    
T  26163663 ttgtacccggtagtgtaacctggattcttggcttcatgtttactatattgagttatgtaaggtccattg 26163731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 450
Target Start/End: Original strand, 26163099 - 26163160
Alignment:
Q  389 ttgtacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaagg 450  Q
    |||||||  ||| |||||| ||| | ||||| ||||||| ||||||||||||||||||||||    
T  26163099 ttgtaccgggtagtgtaatctgggttcttggcttcatgtgtaccatattgagttatgtaagg 26163160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 292
Target Start/End: Complemental strand, 32189434 - 32189237
Alignment:
Q  95 cactcttcaagtgctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgtgacatcgagaaaggaa 194  Q
    |||| |||||||| |  ||||||  |||||||||| |||||  ||| ||||||||| ||||| || ||||  |||| ||||||||| |  |||| ||| |    
T  32189434 cactgttcaagtgtttttctcatatatttggcttgtggagaatcttgagggattgacaagagatgtagaactcttgtgagttgtgagagtgagagaggca 32189335  T
Q  195 tggagtcggcctcnnnnnnngagaggtaaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaa 292  Q
    | |||||||||||       || ||| || ||| || || ||| |||||||||||||||||||||||||||||||   ||||||||| |||| |||||    
T  32189334 ttgagtcggcctccttttttgaaaggaaatgaggaattttttgaaccggaaattggagggtcattacatttccaacacgaagatcattcaaattgaaa 32189237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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