View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_high_2 (Length: 1006)
Name: NF3726_high_2
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 472 - 788
Target Start/End: Complemental strand, 44961420 - 44961087
Alignment:
| Q |
472 |
gctcatgaacaccacaactcaagaaagcaatttcttttctggaaaaaatcatgctttttaaagctcacccatataattcccactcattatctttgttgct |
571 |
Q |
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| T |
44961420 |
gctcatgaacaccacaactcaagaaagcaatttcttttctggaaaaaatcatgctttttaaagctcacccatataattcccactcattatctttgttgct |
44961321 |
T |
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| Q |
572 |
taaagctcttctcctccttatctcatctca-----------------tctctctactcttaaacttaaccacatcaattccaaagcaaattccttcattt |
654 |
Q |
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| T |
44961320 |
taaagctcttctcctccttatctcatctctcactatctctctctctctctctctactcttaaacttaaccacatcaattccaaagcaaattccttcattt |
44961221 |
T |
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| Q |
655 |
acctaaacaaagtaacaaatataacaacacacccatatctccccctcaaaatgagaacaaagacccaccatacatattaaactactataacctcacttat |
754 |
Q |
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| T |
44961220 |
acctaaacaaagtaacaaatataacaacacacccatatctccccctcaaaatgagaacaaagacccaccatacatattaaactactataacctcacttat |
44961121 |
T |
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| Q |
755 |
catacacaacaacacaagtctctctcatattcat |
788 |
Q |
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| T |
44961120 |
catacacaacaacacaagtctctctcatattcat |
44961087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 44961857 - 44961591
Alignment:
| Q |
7 |
aagcaaaggggcaaagttgaagagcaaaggtgaagaagaaaaggcaaaatgaaatgattacatgaatgagatgggacccaattgataatatttcctttcc |
106 |
Q |
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| T |
44961857 |
aagcaaaggggcaaagttgaagagcaaaggtgaagaagaaaaggcaaaatgaaatgattacatgaatgagatgggacccaattgataatatttcctttcc |
44961758 |
T |
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| Q |
107 |
aggtctttcaattttannnnnnn--gacttgggatcgggtcccactttggccaccattgtctttatggattgaatgataaaaagagcacctcacgtggag |
204 |
Q |
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| T |
44961757 |
aggtctttcaattttatttttttttgacttgggatcgggtcccactttggccaccattgtctttatggattgaatgataaaaagagcacctcacgtggag |
44961658 |
T |
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| Q |
205 |
tctgaaccaaagacgctgtccaaccataatc-aaagggaacaacacaatactactctactctcttcc |
270 |
Q |
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| T |
44961657 |
tctgaaccaaagacgctgtccaaccataatcaaaagggaacaacacaatactactctactctcttcc |
44961591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 44961542 - 44961492
Alignment:
| Q |
351 |
ttttttctacttccagcttaaatcttcatctttccatacaagcagaatgat |
401 |
Q |
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| T |
44961542 |
ttttttctacttccagcttaaatcttcatctttccatacaagcagaatgat |
44961492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 7e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 832 - 1006
Target Start/End: Complemental strand, 49267366 - 49267191
Alignment:
| Q |
832 |
gatacattcaaaggcaataatgacactccctgacataagcaagaacccaaatgactgtttcgagtgcaaataatacaacagttgctcttaaaatcaagag |
931 |
Q |
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| T |
49267366 |
gatacattcaaaggcaataatgacactccctgacataagcaagaacccaaatgactgtttcgagtgcaaataatacaacagttgctcttaaaatcaagag |
49267267 |
T |
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| Q |
932 |
cctaacgg-nnnnnnnnnnnnnnnnnncttacaagaagactgaagccagagacaccacagagagagatagcaatag |
1006 |
Q |
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| T |
49267266 |
ccaaacggaaaaaagaaaaaaaaaaaacttacaagaagactgaagccagagacaccacagagagagatagcaatag |
49267191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 958 - 1006
Target Start/End: Complemental strand, 49254977 - 49254929
Alignment:
| Q |
958 |
cttacaagaagactgaagccagagacaccacagagagagatagcaatag |
1006 |
Q |
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| T |
49254977 |
cttacaagaagactgaagccagagacaacacagagagagatagcaatag |
49254929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 958 - 1006
Target Start/End: Complemental strand, 49271645 - 49271597
Alignment:
| Q |
958 |
cttacaagaagactgaagccagagacaccacagagagagatagcaatag |
1006 |
Q |
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| T |
49271645 |
cttacaagaagactgaagccagagacaccatagagagagatagcaatag |
49271597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 17435965 - 17435910
Alignment:
| Q |
153 |
ggccaccattgtctttatggattgaatgataaaaagagcacctcacgtggagtctgaa |
210 |
Q |
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| T |
17435965 |
ggccaccacagtctttatggattgaatgat--aaagagcaccgcacgtggagtctgaa |
17435910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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