View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3726_high_25 (Length: 432)
Name: NF3726_high_25
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_25 |
 | |
|
| [»] scaffold0238 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 31900684 - 31900832
Alignment:
| Q |
22 |
tttctacaattttaatacgatattactacaccaaagtcatttacattggtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagatt |
121 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31900684 |
tttctacaatttt--tacgatattactaccccaaagtcatttaaattggtatgtacaatgtcacaatacataaaactcacattaagctgcacttgagatt |
31900781 |
T |
|
| Q |
122 |
aactccaccttgagttttgtagcaac-aatgtttatttcttcttcgtctgc |
171 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31900782 |
aactccaccttgagttttgtagcaacaaatgtttatttcttcttcgtctgc |
31900832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 321 - 417
Target Start/End: Original strand, 31925598 - 31925694
Alignment:
| Q |
321 |
aaacaaaactgcagcaacaccaactggcacacacagaacaataaaggaaagcaatggctgaaaaaatggcaaagaactacacctgcagccaaagatt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
31925598 |
aaacaaaactgcagcaacaccaactggcacacacaagacaataaaggagagcaatggctgaaacaatggcaaagaactacaactgcagccaaagatt |
31925694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 29 - 152
Target Start/End: Complemental strand, 4740112 - 4739990
Alignment:
| Q |
29 |
aattttaatacgatattactacaccaaagtcatttacattggtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactcca |
128 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||||||||| |||| ||||||||||||||| | |||| ||||||||| ||||||||||||| |||||| |
|
|
| T |
4740112 |
aattctaatactatattactacaccactgtcatttacatctgtatatacaatgtcacaatagaaaaaaa-cacattaagttgcacttgagatttactcca |
4740014 |
T |
|
| Q |
129 |
ccttgagttttgtagcaacaatgt |
152 |
Q |
| |
|
||||||||| | ||||| |||||| |
|
|
| T |
4740013 |
ccttgagttctatagcagcaatgt |
4739990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 888486 - 888656
Alignment:
| Q |
1 |
ttcgttagtaattgtaaaaaatttctacaattttaatacgatattactacaccaaagtcatttacattggtatgtacaatgtcacaatacataaaattca |
100 |
Q |
| |
|
|||| |||||||||| ||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| || |
|
|
| T |
888486 |
ttcgctagtaattgtgaaatttttctacaattttaatacaatattactacaccaatgtcatttacattggtatgtacaatgtcacgatagataaaacaca |
888585 |
T |
|
| Q |
101 |
cattaagctgcacttgagattaactccaccttgagttttgtagcaacaatgtttatttcttcttcgtctgc |
171 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
888586 |
cattaagctgcacttgagattagctccaccttaagttttgttgcaacaatgtttctttcttcttcgtctgc |
888656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 888740 - 888789
Alignment:
| Q |
255 |
gcttatatagaacacagtgattgtatctagaaagttactatcctactata |
304 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
888740 |
gcttatatagaacacagtgattgtacctacaaagttattatcctactata |
888789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 152
Target Start/End: Complemental strand, 10453813 - 10453692
Alignment:
| Q |
29 |
aattttaatacgatattactacaccaaagtcatttacattggtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactcca |
128 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||||||||| |||| ||||||||||||||| | |||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
10453813 |
aattctaatactatattactacaccagtgtcatttacatctgtatatacaatgtcacaatagaaaaaa--cacattaagttgcacttgagattagctcca |
10453716 |
T |
|
| Q |
129 |
ccttgagttttgtagcaacaatgt |
152 |
Q |
| |
|
||||||||| | ||||| |||||| |
|
|
| T |
10453715 |
ccttgagttctatagcagcaatgt |
10453692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 52937291 - 52937210
Alignment:
| Q |
70 |
gtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactccaccttgagttttgtagcaacaatg |
151 |
Q |
| |
|
||||| |||||||||||| | | ||||| ||||||||||| || ||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
52937291 |
gtatgcacaatgtcacaaaagaaaaaatacacattaagcttcatttgagattagctccaccctgagttttgtagcaacaatg |
52937210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 52944926 - 52944845
Alignment:
| Q |
70 |
gtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactccaccttgagttttgtagcaacaatg |
151 |
Q |
| |
|
||||| |||||||||||| | | ||||| ||||||||||| || ||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
52944926 |
gtatgcacaatgtcacaaaagaaaaaatacacattaagcttcatttgagattagctccaccctgagttttgtagcaacaatg |
52944845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 12603305 - 12603414
Alignment:
| Q |
41 |
atattactacaccaaagtcatttacattggtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactccaccttgagttttg |
140 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| |||||| |||||||| | |||| ||||||||| |||||||||||||| |||||| ||||||| | |
|
|
| T |
12603305 |
atattactacaccagtgtcatttacatctgtatatacaatttcacaatagaaaaaa--cacattaagttgcacttgagattagctccactttgagttcta |
12603402 |
T |
|
| Q |
141 |
tagcaacaatgt |
152 |
Q |
| |
|
||||| |||||| |
|
|
| T |
12603403 |
tagcagcaatgt |
12603414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 152
Target Start/End: Complemental strand, 13649 - 13528
Alignment:
| Q |
29 |
aattttaatacgatattactacaccaaagtcatttacattggtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactcca |
128 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||||||||| |||| | |||| |||||||| | |||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
13649 |
aattctaatactatattactacaccagtgtcatttacatctgtatattcaatttcacaatagaaaaaa--cacattaagttgcacttgagattagctcca |
13552 |
T |
|
| Q |
129 |
ccttgagttttgtagcaacaatgt |
152 |
Q |
| |
|
| ||||||| | ||||| |||||| |
|
|
| T |
13551 |
ctttgagttctatagcagcaatgt |
13528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University