View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_high_28 (Length: 424)

Name: NF3726_high_28
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_high_28
NF3726_high_28
[»] chr4 (4 HSPs)
chr4 (108-424)||(31737190-31737503)
chr4 (200-303)||(13852294-13852397)
chr4 (10-42)||(31737092-31737124)
chr4 (326-368)||(55351269-55351311)
[»] chr6 (2 HSPs)
chr6 (116-324)||(8247039-8247247)
chr6 (227-263)||(14457238-14457274)
[»] chr7 (2 HSPs)
chr7 (185-331)||(12829238-12829388)
chr7 (326-403)||(44162403-44162480)
[»] chr1 (3 HSPs)
chr1 (180-327)||(40197872-40198019)
chr1 (326-379)||(40388157-40388210)
chr1 (148-264)||(40387947-40388063)
[»] chr5 (2 HSPs)
chr5 (164-330)||(29299614-29299780)
chr5 (330-367)||(10428279-10428316)
[»] scaffold0263 (1 HSPs)
scaffold0263 (326-368)||(8633-8675)
[»] chr8 (2 HSPs)
chr8 (182-324)||(4901708-4901850)
chr8 (149-331)||(25659795-25659977)
[»] chr2 (1 HSPs)
chr2 (326-400)||(33482996-33483070)
[»] chr3 (1 HSPs)
chr3 (326-379)||(49454579-49454632)


Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 108 - 424
Target Start/End: Original strand, 31737190 - 31737503
Alignment:
Q  108 taatttgtataatcgaattcatcaccccggccaaacgccttgctagaaccttggcaagtaatttgtataaacaaccaagcaaagatataggacgataatc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31737190 taatttgtataatcgaattcatcaccccggccaaacgccttgctagaaccttggcaagtaatttgtataaacaaccaatcaaagatataggacgataatc 31737289  T
Q  208 cttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttggtattacctcattagcatggaattgatcaaataaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31737290 cttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttggtattacctcattagcatggaattgatcaaataaa 31737389  T
Q  308 atcctcacctcatccttgattaaaaccatccggacccggacttttattaccgtcactatctctcaccaccgcttctatctccattaacgaaaaaggctta 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  31737390 atcctcacctcatccttgattaaaaccatccggacccggacttttattaccgtcactatctctcaccaccgcttctatctccattaacgaaaaaggct-- 31737487  T
Q  408 ataatcaattcctcatt 424  Q
     ||||||||||||||||    
T  31737488 -taatcaattcctcatt 31737503  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 303
Target Start/End: Complemental strand, 13852397 - 13852294
Alignment:
Q  200 cgataatccttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttggtattacctcattagcatggaattgat 299  Q
    ||||||||||||||  |||  || || || ||||||||||| |||||||||||||| || |||||    |||||||  |||||||||||||| |||||||    
T  13852397 cgataatccttcaactccaaaggtgaagacacttttggaattaaagcaacaaaatacgccaacatggactttggtagcacctcattagcatgaaattgat 13852298  T
Q  300 caaa 303  Q
    ||||    
T  13852297 caaa 13852294  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 31737092 - 31737124
Alignment:
Q  10 cagcacagacagcagtagcgcacccatacagta 42  Q
    |||||||||||||||||||||||||||||||||    
T  31737092 cagcacagacagcagtagcgcacccatacagta 31737124  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 55351311 - 55351269
Alignment:
Q  326 attaaaaccatccggacccggacttttattaccgtcactatct 368  Q
    |||||| |||||||||||||| ||||||||||| |||||||||    
T  55351311 attaaatccatccggacccgggcttttattaccatcactatct 55351269  T

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Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 116 - 324
Target Start/End: Original strand, 8247039 - 8247247
Alignment:
Q  116 ataatcgaattcatcaccccggccaaacgccttgctagaaccttggcaagtaatttgtataaacaaccaagcaaagatataggacgataatccttcaaag 215  Q
    ||||| |||||||| |  || ||||||||||||| || ||| ||||| |||||||||||||||| ||| ||||| || ||||  || |||||||||| ||    
T  8247039 ataatagaattcataattcccgccaaacgccttgttaaaactttggcgagtaatttgtataaactacctagcaatgaaatagagcggtaatccttcatag 8247138  T
Q  216 ccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttggtattacctcattagcatggaattgatcaaataaaatcctcac 315  Q
    |||| |||||||||||||| |  ||||| |||||||||||  | ||||| ||||||| ||| | |||||||||||| |||||||| || |||||| ||||    
T  8247139 ccattggagatgaaactttcgatatcaatgcaacaaaatacaccaacattccttttgatataatctcattagcatgaaattgatcgaacaaaatcatcac 8247238  T
Q  316 ctcatcctt 324  Q
    |||||||||    
T  8247239 ctcatcctt 8247247  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 14457274 - 14457238
Alignment:
Q  227 gaaacttttggaatcaaagcaacaaaataagctaaca 263  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  14457274 gaaacttttggaatcaaagccacaaaataagccaaca 14457238  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 331
Target Start/End: Original strand, 12829238 - 12829388
Alignment:
Q  185 agcaaagatataggacgataatccttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttggtattacctcat 284  Q
    |||||||| |||||  | ||||||||||||||| | |||||||||||||  |||||||||||||||||||| |||||||  |||||||| ||| ||||||    
T  12829238 agcaaagaaatagggtggtaatccttcaaagccctaggagatgaaacttccggaatcaaagcaacaaaatacgctaacaaaccttttgggatttcctcat 12829337  T
Q  285 tagcatggaattgatcaa----ataaaatcctcacctcatccttgattaaa 331  Q
    |  |||| ||||||||||    ||| ||||| |||||||||||||||||||    
T  12829338 tcccatgaaattgatcaaacatatataatccgcacctcatccttgattaaa 12829388  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 403
Target Start/End: Complemental strand, 44162480 - 44162403
Alignment:
Q  326 attaaaaccatccggacccggacttttattaccgtcactatctctcaccaccgcttctatctccattaacgaaaaagg 403  Q
    ||||||||||||||| ||||| |||||||  || || |||||| | |||||||| ||||| |||| ||| ||||||||    
T  44162480 attaaaaccatccggtcccgggcttttatccccatcgctatctttaaccaccgcctctatttccaataaggaaaaagg 44162403  T

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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 180 - 327
Target Start/End: Original strand, 40197872 - 40198019
Alignment:
Q  180 aaccaagcaaagatataggacgataatccttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttggtattac 279  Q
    ||||||||||||| || ||  || ||||| |||||||||| || ||  ||||||| ||||| || |||||||||||||| ||||||||  | || | |||    
T  40197872 aaccaagcaaagaaatcggttgaaaatccctcaaagccataggggacaaaactttaggaattaacgcaacaaaataagccaacatccccctcggaaatac 40197971  T
Q  280 ctcattagcatggaattgatcaaataaaatcctcacctcatccttgat 327  Q
    ||||||| |||| ||||| ||||| | ||| ||||||||||| |||||    
T  40197972 ctcattaccatgaaattggtcaaacataattctcacctcatctttgat 40198019  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 379
Target Start/End: Original strand, 40388157 - 40388210
Alignment:
Q  326 attaaaaccatccggacccggacttttattaccgtcactatctctcaccaccgc 379  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  40388157 attaaaaccatccggacacggacttttattaccatcactatctctaaccaccgc 40388210  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 264
Target Start/End: Original strand, 40387947 - 40388063
Alignment:
Q  148 tgctagaaccttggcaagtaatttgtataaacaaccaagcaaagatataggacgataatccttcaaagccatcggagatgaaacttttggaatcaaagca 247  Q
    ||||| ||||||||| |||||||| ||||| || || |||||  |||| || | | ||||||||||| |||||| |||||| ||||| ||||||||||      
T  40387947 tgctaaaaccttggctagtaatttatataagcatcctagcaagaatattggcctaaaatccttcaaatccatcgaagatgacactttgggaatcaaagtc 40388046  T
Q  248 acaaaataagctaacat 264  Q
    |||||| |||| |||||    
T  40388047 acaaaaaaagccaacat 40388063  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 330
Target Start/End: Complemental strand, 29299780 - 29299614
Alignment:
Q  164 agtaatttgtataaacaaccaagcaaagatataggacgataatccttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaaca 263  Q
    ||||| ||||| | || |||||| | ||| || |||||| | ||||||||   |||||| || || || ||||| |||||||| |||||||||||||| |    
T  29299780 agtaacttgtaaatactaccaagtagagaaattggacgaaagtccttcaacatcatcggtgaggacacctttgggatcaaagcgacaaaataagctaata 29299681  T
Q  264 tcccttttggtattacctcattagcatggaattgatcaaataaaatcctcacctcatccttgattaa 330  Q
      | | |||| |  |||||||||||||| ||||||||||| | |||||||||||||||||| |||||    
T  29299680 aacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaa 29299614  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 367
Target Start/End: Complemental strand, 10428316 - 10428279
Alignment:
Q  330 aaaccatccggacccggacttttattaccgtcactatc 367  Q
    |||||||||||||||||||||||||  |||||||||||    
T  10428316 aaaccatccggacccggacttttatcgccgtcactatc 10428279  T

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Target: scaffold0263 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 8633 - 8675
Alignment:
Q  326 attaaaaccatccggacccggacttttattaccgtcactatct 368  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  8633 attaaaaccatccggacccggacttttattaccatcactatct 8675  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 182 - 324
Target Start/End: Complemental strand, 4901850 - 4901708
Alignment:
Q  182 ccaagcaaagatataggacgataatccttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttggtattacct 281  Q
    ||||||||||| || |||||| ||||||| |||||||  || || ||||  |||||||| ||||| ||||| ||||||||||| |  || ||||  ||||    
T  4901850 ccaagcaaagaaatgggacgaaaatccttaaaagccaaaggggaagaaatctttggaattaaagctacaaagtaagctaacatactcttcggtaaaacct 4901751  T
Q  282 cattagcatggaattgatcaaataaaatcctcacctcatcctt 324  Q
    ||||||| || ||||||||||| | ||| || || ||||||||    
T  4901750 cattagcgtgaaattgatcaaacataattctaacttcatcctt 4901708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 331
Target Start/End: Complemental strand, 25659977 - 25659795
Alignment:
Q  149 gctagaaccttggcaagtaatttgtataaacaaccaagcaaagatataggacgataatccttcaaagccatcggagatgaaacttttggaatcaaagcaa 248  Q
    ||||| ||||| ||||||| ||| || | ||| |||||||| || || || | ||||||||||||  |||  || || || ||||| | ||| ||||  |    
T  25659977 gctaggacctttgcaagtattttatagagacatccaagcaaggaaatcggtctataatccttcaactccaaaggggacgagactttagtaattaaagtca 25659878  T
Q  249 caaaataagctaacatcccttttggtattacctcattagcatggaattgatcaaataaaatcctcacctcatccttgattaaa 331  Q
    |||||||||| ||||| ||| | || |  |||||||||||||| ||||| ||||| ||||| ||||| ||||| || ||||||    
T  25659877 caaaataagccaacatacctctcggcaacacctcattagcatgaaattggtcaaacaaaattctcacttcatctttaattaaa 25659795  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 400
Target Start/End: Complemental strand, 33483070 - 33482996
Alignment:
Q  326 attaaaaccatccggacccggacttttattaccgtcactatctctcaccaccgcttctatctccattaacgaaaa 400  Q
    ||||||||| ||||| |||||||||||||  |||||||| ||  |||||||||| || ||||||| |||||||||    
T  33483070 attaaaaccgtccggtcccggacttttatccccgtcactctccttcaccaccgcctcaatctccaataacgaaaa 33482996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 49454632 - 49454579
Alignment:
Q  326 attaaaaccatccggacccggacttttattaccgtcactatctctcaccaccgc 379  Q
    ||||||| ||||||||||||| ||||||  ||| ||||||||||||||||||||    
T  49454632 attaaaagcatccggacccgggcttttaccaccatcactatctctcaccaccgc 49454579  T

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