View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_high_37 (Length: 402)
Name: NF3726_high_37
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 45792144 - 45791771
Alignment:
| Q |
18 |
ccttgtattggatttatcttggtcagacaaatgtcaaataacaaaatttatgcgaaaaccaaaatactcaagcaatagtataaactactgacggtgcaac |
117 |
Q |
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| T |
45792144 |
ccttgtattggatttatcttggtcagacaaatgtcaaataacaaaatttatgcgaaaaccaaaatactcaagcaatagtataaactacttacggtgcgat |
45792045 |
T |
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| Q |
118 |
atgattattcacaagtataaaatatattctccaaaacttcctctctttcatgacgagtggacacaactcatacctcaattttgaaatttcctgcaacaaa |
217 |
Q |
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| T |
45792044 |
atgattattcacaagtataaaatatattctccaaaacttcctctctttcatgacatgtggacacaactcatacctcaattttgaaatttcctgcaacaaa |
45791945 |
T |
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| Q |
218 |
gaataaactgaattgtgaaaggctagttttcaaaaatacctattgac--aaaagataagtaaaacacagaaggaagaataacatgtatacataaaacaaa |
315 |
Q |
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| T |
45791944 |
aaataaactgaattgtgaaaggctagttttcaaaaatacctattgacaaaaaaaataagtaaaacacagaaggaagaataacatgtatacataaaacaaa |
45791845 |
T |
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| Q |
316 |
ttatacaccaaggtgtcagattttactttcttcatgctaggttaacccaaaaataggcagtgctttttgaccct |
389 |
Q |
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| T |
45791844 |
ttatacaccaaggtgtcagattttactttcttcatgctaggttaacccaaaaataggcagtgctttttgaccct |
45791771 |
T |
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