View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_high_38 (Length: 399)
Name: NF3726_high_38
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 387
Target Start/End: Original strand, 35460345 - 35460725
Alignment:
| Q |
7 |
gttgagacctcaaaatcgtttacactggacctccaatcaatttgaaaccatgatgctagtcgnnnnnnnctcttttgaattctaggatagttaaggcagt |
106 |
Q |
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| T |
35460345 |
gttgagacctcaaaatcgtttacactggacctc-aatcaatttgaaaccatgatactagtcgtttttttctcttttgaattctaggatagtcaaggaagt |
35460443 |
T |
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| Q |
107 |
ttaaaggttattactatagttggatgatgtaatcaagtttgttagtctttatcttgttgttttacaaagtcgcgaaattgtttgtgcagttatgtaatct |
206 |
Q |
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| T |
35460444 |
ttaaaggttattactatagttggatgatgtaatcaagtttgttagtctttatcttgttgttttacaaagtcgcgaaattgtttgtgcagttatgtaatct |
35460543 |
T |
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| Q |
207 |
tgtctgtttattatgttatgtaatgtagaagctacaagaatggatacgtgtggcatgaccttagtgaagatgatctaattctgcctgcacatggtaatga |
306 |
Q |
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| T |
35460544 |
tgtctgtttattatgttatgtaatgtagaagctacaagaatggatatgtgtggcatgaccttagtgaagatgatctaattctacctgcacatggtaatga |
35460643 |
T |
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| Q |
307 |
gtatgtcctcaaaggctccgagctgttttgcgaatcaaattcaggtcaataataata-tttgcatcttgttttgtttatcta |
387 |
Q |
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| T |
35460644 |
gtatgtcctcaaaggctccgagctgttttgcgaatcaaattcaggtcaataataatattttgcttcttgttttgtttatcta |
35460725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 352
Target Start/End: Complemental strand, 20982612 - 20982493
Alignment:
| Q |
233 |
agaagctacaagaatggatacgtgtggcatgaccttagtgaagatgatctaattctgcctgcacatggtaatgagtatgtcctcaaaggctccgagctgt |
332 |
Q |
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| T |
20982612 |
agaagctacaagaatggatttgtgtggcatgatctttgtgaagatgatcttattcaaccggcccatggaaacgagtatgtccttaaaggctctgagctct |
20982513 |
T |
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| Q |
333 |
tttgcgaatcaaattcaggt |
352 |
Q |
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|| ||||| ||||||||| |
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| T |
20982512 |
ttgatgaatccaattcaggt |
20982493 |
T |
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