View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3726_high_41 (Length: 379)
Name: NF3726_high_41
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_high_41 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 3568291 - 3567942
Alignment:
| Q |
13 |
cagacgaagaacatttttcttgattaacatcaacagtcgcagtggacaaaggtgttgtcacttccacatgcttaatgggaacaaaaatttattcatcctc |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3568291 |
cagacgaagaagatttttcttgattaacatcaacagtcgcagtggacaaaggtgttgtcacttccacatgcttaatgggaacaaaaatttattcatcctc |
3568192 |
T |
|
| Q |
113 |
caccttcttctttcctttgtctttgtcgcgagaaggctctgggatgcaaccacttacaatttgaaatgttatgaccaataacataacaatgatgacaaaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3568191 |
caccttcttctttcctttgtctttgtcgcgagaaggctctgggatacaaccacttacaatttgaaatgttatgaccaatgacataacaatgatgacaaaa |
3568092 |
T |
|
| Q |
213 |
aagaggcatgcgctcatactgcatatctactttgaaagaaaaaccctgccgccccacaaggatttcatcatacacacgcttagataggtcaatatccacc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3568091 |
aagaggcatgcgctcatactgcatatctactttgaaagaaaaaccctgccgctccacaaggatttcatcatacacacgcttagataggtcaatatccacc |
3567992 |
T |
|
| Q |
313 |
aaaattcgtgcataatgtttgaatgccctattccgagtcggggcatctat |
362 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3567991 |
aaaattcgtgcataatgtttgaaggccctattccgagtcggggcatctat |
3567942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 361
Target Start/End: Original strand, 32239235 - 32239332
Alignment:
| Q |
266 |
ccacaaggatttcatcatacacacgcttagataggtcaatatccaccaaaattcgtgcataatgtttgaat--gccctattccgagtcggggcatcta |
361 |
Q |
| |
|
||||||| ||||||||||| | | ||||||| |||||| ||||||||||||| ||||| ||| ||||| |||||||| || ||||||||||||| |
|
|
| T |
32239235 |
ccacaagaatttcatcataggctcttttagataagtcaatgtccaccaaaattctcgcatagtgtctgaattagccctatttcgtgtcggggcatcta |
32239332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 361
Target Start/End: Complemental strand, 24372011 - 24371916
Alignment:
| Q |
266 |
ccacaaggatttcatcatacacacgcttagataggtcaatatccaccaaaattcgtgcataatgtttgaatgccctattccgagtcggggcatcta |
361 |
Q |
| |
|
||||||| |||||||||| | | |||||| | |||||| |||||||||||| |||||||||| |||| |||||||| |||||||||||||||| |
|
|
| T |
24372011 |
ccacaagaatttcatcatcggccctcttagacaagtcaatgtccaccaaaatttatgcataatgtctgaaggccctattacgagtcggggcatcta |
24371916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 326
Target Start/End: Original strand, 14385152 - 14385290
Alignment:
| Q |
188 |
caataacataacaatgatgacaaaaaagaggcatgcgctcatactgcatatctactttgaaagaaaaaccctgccgccccacaaggatttcatcatacac |
287 |
Q |
| |
|
|||| |||||||||||||||||||| | ||| | ||||| |||| ||||| || |||| |||||||| ||| | ||||||||||||||||| || |
|
|
| T |
14385152 |
caatgacataacaatgatgacaaaacaaaggacgtctttcatattgcacttctacgttaaaagcaaaaccctcccgttcaacaaggatttcatcataaac |
14385251 |
T |
|
| Q |
288 |
acgcttagataggtcaatatccaccaaaattcgtgcata |
326 |
Q |
| |
|
||||| |||| |||||| ||||| | ||| |||||||| |
|
|
| T |
14385252 |
ccgcttcgataagtcaatgtccacaagaatgcgtgcata |
14385290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 355
Target Start/End: Complemental strand, 14679 - 14624
Alignment:
| Q |
300 |
gtcaatatccaccaaaattcgtgcataatgtttgaatgccctattccgagtcgggg |
355 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| |||| |||||||| || ||||||| |
|
|
| T |
14679 |
gtcaatgtccaccagaattcgtgcataatgtctgaaggccctattacgtgtcgggg |
14624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 11483104 - 11483044
Alignment:
| Q |
269 |
caaggatttcatcatacacacgcttagataggtcaatatccaccaaaattcgtgcataatg |
329 |
Q |
| |
|
|||||||||||||| | |||||||| |||| |||||| |||| |||||| | ||||||||| |
|
|
| T |
11483104 |
caaggatttcatcaaaaacacgctttgataagtcaatgtccaacaaaatccttgcataatg |
11483044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University